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protocols::antibody2::RefineOneCDRLoopCentroid Member List

This is the complete list of members for protocols::antibody2::RefineOneCDRLoopCentroid, including all inherited members.

apply(pose::Pose &pose)protocols::antibody2::RefineOneCDRLoopCentroidvirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
benchmark_protocols::antibody2::RefineOneCDRLoopCentroidprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
create()protocols::moves::Movervirtual
Filters_map typedefprotocols::moves::Mover
finalize_setup(core::pose::Pose const &pose)protocols::antibody2::RefineOneCDRLoopCentroidprivate
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::antibody2::RefineOneCDRLoopCentroidvirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loop_centroid_relax(pose::Pose &pose, Size const loop_begin, Size const loop_end)protocols::antibody2::RefineOneCDRLoopCentroidprivate
lowres_scorefxn_protocols::antibody2::RefineOneCDRLoopCentroidprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
refine_input_loop_protocols::antibody2::RefineOneCDRLoopCentroidprivate
RefineOneCDRLoopCentroid(AntibodyInfoCOP antibody_info, AntibodyCDRNameEnum const &loop_name)protocols::antibody2::RefineOneCDRLoopCentroid
RefineOneCDRLoopCentroid(AntibodyInfoCOP antibody_info, AntibodyCDRNameEnum const &loop_name, core::scoring::ScoreFunctionCOP scorefxn)protocols::antibody2::RefineOneCDRLoopCentroid
RefineOneCDRLoopCentroid(loops::Loop const &a_cdr_loop)protocols::antibody2::RefineOneCDRLoopCentroid
RefineOneCDRLoopCentroid(loops::Loop const &a_cdr_loop, core::scoring::ScoreFunctionCOP scorefxn)protocols::antibody2::RefineOneCDRLoopCentroid
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
save_state(SerializableState &state)protocols::moves::Movervirtual
set_benchmark(bool const &setting)protocols::antibody2::RefineOneCDRLoopCentroidinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_default()protocols::antibody2::RefineOneCDRLoopCentroidprivate
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_refine_input_loop(bool const &setting)protocols::antibody2::RefineOneCDRLoopCentroidinline
set_score_function(core::scoring::ScoreFunctionCOP scorefxn)protocols::antibody2::RefineOneCDRLoopCentroid
set_snugfit(bool const &setting)protocols::antibody2::RefineOneCDRLoopCentroidinline
snug_fit_protocols::antibody2::RefineOneCDRLoopCentroidprivate
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
the_cdr_loop_protocols::antibody2::RefineOneCDRLoopCentroidprivate
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
~Mover()protocols::moves::Movervirtual
~RefineOneCDRLoopCentroid()protocols::antibody2::RefineOneCDRLoopCentroid