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protocols::match::downstream::SecondaryMatcherToDownstreamResidue Member List

This is the complete list of members for protocols::match::downstream::SecondaryMatcherToDownstreamResidue, including all inherited members.

active_site_grid() const protocols::match::downstream::DownstreamAlgorithminlineprotected
active_site_grid_set() const protocols::match::downstream::DownstreamAlgorithminlineprotected
add_evaluator(SecMatchResiduePairEvaluatorCOP evaluator, Size mcfi_id)protocols::match::downstream::SecondaryMatcherToDownstreamResidue
are_colliding(core::conformation::Residue const &us_res, core::conformation::Residue const &ds_res, utility::vector1< core::id::AtomID > const &ds_atoms, utility::vector1< core::Size > const &catalytic_atoms) const protocols::match::downstream::DownstreamAlgorithm
bbgrid() const protocols::match::downstream::DownstreamAlgorithminlineprotected
build(Size const scaffold_build_point_id, Size const upstream_conf_id, core::conformation::Residue const &upstream_residue) const protocols::match::downstream::SecondaryMatcherToDownstreamResiduevirtual
build_hits_at_all_positions(Matcher &matcher)protocols::match::downstream::SecondaryMatcherToDownstreamResiduevirtual
catalytic_atoms_protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
clone() const protocols::match::downstream::SecondaryMatcherToDownstreamResiduevirtual
default_build_hits_at_all_positions(Matcher const &matcher) const protocols::match::downstream::DownstreamAlgorithmprotected
downstream_atom_coordinates_needed_protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
downstream_restype_protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
DownstreamAlgorithm(Size geom_cst_id)protocols::match::downstream::DownstreamAlgorithm
DownstreamAlgorithm(DownstreamAlgorithm const &)protocols::match::downstream::DownstreamAlgorithm
ds_atom_present(Size index) const protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
Evaluator_MCFI_ID_Pair typedefprotocols::match::downstream::SecondaryMatcherToDownstreamResidue
EvaluatorSet typedefprotocols::match::downstream::SecondaryMatcherToDownstreamResidue
focused_geomcst_id_protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
generates_primary_hits() const protocols::match::downstream::SecondaryMatcherToDownstreamResiduevirtual
geom_cst_id() const protocols::match::downstream::DownstreamAlgorithm
get_dsbuilder() const protocols::match::downstream::DownstreamAlgorithm
get_min_sep_d2_from_upstream_atoms() const protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
hits_for_focused_geomcst_and_build_point_begin_protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
hits_for_focused_geomcst_and_build_point_end_protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
hits_for_focused_geomcst_end_protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
hits_to_include_with_partial_match(match_dspos1 const &) const protocols::match::downstream::SecondaryMatcherToDownstreamResiduevirtual
n_possible_hits_per_upstream_conformation() const protocols::match::downstream::SecondaryMatcherToDownstreamResiduevirtual
occspace_rev_id_at_last_update_protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
operator=(DownstreamAlgorithm const &)protocols::match::downstream::DownstreamAlgorithm
parent typedefprotocols::match::downstream::SecondaryMatcherToDownstreamResidue
prepare_for_hit_generation(Matcher &matcher)protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
prepare_for_hit_generation_at_target_build_point(Matcher &matcher, Size target_geomcst_id, upstream::ScaffoldBuildPoint const &target_build_point)protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
prepare_for_hit_generation_for_geomcst(Matcher &matcher, Size target_geomcst_id)protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
prepare_for_match_enumeration(Matcher const &)protocols::match::downstream::DownstreamAlgorithmvirtual
respair_evaluators_protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
respond_to_peripheral_hitlist_change(Matcher &matcher)protocols::match::downstream::SecondaryMatcherToDownstreamResiduevirtual
respond_to_primary_hitlist_change(Matcher &matcher, Size round_just_completed)protocols::match::downstream::SecondaryMatcherToDownstreamResiduevirtual
SecondaryMatcherToDownstreamResidue(core::pose::PoseCOP upstream_pose, Size geom_cst_id)protocols::match::downstream::SecondaryMatcherToDownstreamResidue
set_active_site_grid(ActiveSiteGridCOP active_site_grid)protocols::match::downstream::DownstreamAlgorithm
set_bb_grid(BumpGridCOP bbgrid)protocols::match::downstream::DownstreamAlgorithm
set_catalytic_atoms(utility::vector1< core::Size > catalytic_atoms)protocols::match::downstream::SecondaryMatcherToDownstreamResidueinline
set_downstream_restype(core::chemical::ResidueTypeCOP downstream_restype)protocols::match::downstream::SecondaryMatcherToDownstreamResidue
set_ds_coords_needed(utility::vector1< core::id::AtomID > ds_coords)protocols::match::downstream::SecondaryMatcherToDownstreamResidueinlineprivate
set_dsbuilder(DownstreamBuilderOP dsbuilder)protocols::match::downstream::DownstreamAlgorithm
set_focused_geomcst_id(Size focused_geomcst_id)protocols::match::downstream::SecondaryMatcherToDownstreamResidue
set_target_rotamer_coords(TargetRotamerCoordsOP target_geomcst_coords)protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
Size typedefprotocols::match::downstream::DownstreamAlgorithm
target_downstream_coords_protocols::match::downstream::SecondaryMatcherToDownstreamResiduemutableprivate
upstream_only() const protocols::match::downstream::SecondaryMatcherToDownstreamResiduevirtual
upstream_pose_protocols::match::downstream::SecondaryMatcherToDownstreamResidueprivate
Vector typedefprotocols::match::downstream::DownstreamAlgorithm
~DownstreamAlgorithm()protocols::match::downstream::DownstreamAlgorithmvirtual
~SecondaryMatcherToDownstreamResidue()protocols::match::downstream::SecondaryMatcherToDownstreamResiduevirtual