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protocols::toolbox::task_operations Namespace Reference

Classes

class  DesignAroundOperation
 
class  DesignAroundOperationCreator
 
class  InterfaceTaskOperation
 
class  JointSequenceOperation
 
class  JointSequenceOperationCreator
 
class  LayerOperations
 
class  LimitAromaChi2_RotamerSetOperation
 
class  LimitAromaChi2Operation
 
class  LimitAromaChi2OperationCreator
 
class  ModifyAnnealer
 
class  ModifyAnnealerCreator
 
class  PreventChainFromRepackingOperation
 
class  PreventChainFromRepackingOperationCreator
 
class  PreventResiduesFromRepackingOperation
 
class  PreventResiduesFromRepackingOperationCreator
 
class  ProteinCore
 
class  ProteinCoreFilterCreator
 
class  ProteinInterfaceDesignOperation
 
class  ProteinInterfaceDesignOperationCreator
 
class  ReadResfileFromDB
 
class  ReadResfileFromDBCreator
 
class  RestrictByCalculatorsOperation
 
class  RestrictByCalculatorsOperationCreator
 
class  RestrictChainToRepackingOperation
 
class  RestrictChainToRepackingOperationCreator
 
class  RestrictIdentitiesAtAlignedPositionsOperation
 
class  RestrictIdentitiesAtAlignedPositionsOperationCreator
 
class  RestrictInterGroupVectorOperation
 
class  RestrictInterGroupVectorOperationCreator
 
class  RestrictNativeResiduesOperation
 
class  RestrictNativeResiduesOperationCreator
 
class  RestrictNonSurfaceToRepackingOperation
 
class  RestrictNonSurfaceToRepackingOperationCreator
 
class  RestrictOperationsBase
 
class  RestrictResiduesToRepackingOperation
 
class  RestrictResiduesToRepackingOperationCreator
 
class  RestrictToAlignedSegmentsOperation
 
class  RestrictToAlignedSegmentsOperationCreator
 
class  RestrictToCDRH3Loop
 
class  RestrictToCDRH3LoopCreator
 
class  DockingNoRepack1
 
class  DockingNoRepack2
 
class  RestrictToInterface
 
class  RestrictToInterfaceCreator
 
class  RestrictToInterfaceOperation
 
class  RestrictToInterfaceOperationCreator
 
class  RestrictToInterfaceVectorOperation
 
class  RestrictToInterfaceVectorOperationCreator
 
class  RestrictToLoopsAndNeighbors
 
class  RestrictToLoopsAndNeighborsCreator
 
class  RestrictToNeighborhoodOperation
 
class  RestrictToNeighborhoodOperationCreator
 
class  RestrictToTerminiOperation
 
class  RestrictToTerminiOperationCreator
 
class  SelectBySASAOperation
 
class  SelectBySASAOperationCreator
 
class  SeqprofConsensusOperation
 
class  RestrictConservedLowDdgOperation
 a Task operation that will check whether the amino acid at a position is conserved in the sequence profile and has an unfavorable ddG when mutated to ala. all positions that match this criterion will get set to repacking. More...
 
class  SeqprofConsensusOperationCreator
 
class  RestrictConservedLowDdgOperationCreator
 
class  SetIGTypeOperation
 
class  SetIGTypeOperationCreator
 
class  ThreadSequenceOperation
 
class  ThreadSequenceOperationCreator
 

Typedefs

typedef
utility::pointer::owning_ptr
< DesignAroundOperation
DesignAroundOperationOP
 
typedef
utility::pointer::owning_ptr
< DesignAroundOperation const > 
DesignAroundOperationCOP
 
typedef
utility::pointer::owning_ptr
< InterfaceTaskOperation
InterfaceTaskOperationOP
 
typedef
utility::pointer::owning_ptr
< InterfaceTaskOperation
InterfaceTaskOperationCOP
 
typedef
utility::pointer::owning_ptr
< JointSequenceOperation
JointSequenceOperationOP
 
typedef
utility::pointer::owning_ptr
< LimitAromaChi2_RotamerSetOperation
LimitAromaChi2_RotamerSetOperationOP
 
typedef
utility::pointer::owning_ptr
< LimitAromaChi2_RotamerSetOperation
const > 
LimitAromaChi2_RotamerSetOperationCOP
 
typedef
utility::pointer::owning_ptr
< LimitAromaChi2Operation
LimitAromaChi2OperationOP
 
typedef
utility::pointer::owning_ptr
< LimitAromaChi2Operation
const > 
LimitAromaChi2OperationCOP
 
typedef
utility::pointer::owning_ptr
< ModifyAnnealer
ModifyAnnealerOP
 
typedef
utility::pointer::owning_ptr
< ModifyAnnealer const > 
ModifyAnnealerCOP
 
typedef
utility::pointer::owning_ptr
< PreventChainFromRepackingOperation
PreventChainFromRepackingOperationOP
 
typedef
utility::pointer::owning_ptr
< PreventChainFromRepackingOperation
const > 
PreventChainFromRepackingOperationCOP
 
typedef
utility::pointer::owning_ptr
< PreventResiduesFromRepackingOperation
PreventResiduesFromRepackingOperationOP
 
typedef
utility::pointer::owning_ptr
< PreventResiduesFromRepackingOperation
const > 
PreventResiduesFromRepackingOperationCOP
 
typedef
utility::pointer::owning_ptr
< ProteinInterfaceDesignOperation
ProteinInterfaceDesignOperationOP
 
typedef
utility::pointer::owning_ptr
< ProteinInterfaceDesignOperation
const > 
ProteinInterfaceDesignOperationCOP
 
typedef
utility::pointer::owning_ptr
< ReadResfileFromDB
ReadResfileFromDBOP
 
typedef
utility::pointer::owning_ptr
< RestrictByCalculatorsOperation
RestrictByCalculatorsOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictByCalculatorsOperation
const > 
RestrictByCalculatorsOperationCOP
 
typedef
utility::pointer::owning_ptr
< RestrictChainToRepackingOperation
RestrictChainToRepackingOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictChainToRepackingOperation
const > 
RestrictChainToRepackingOperationCOP
 
typedef
utility::pointer::owning_ptr
< RestrictIdentitiesAtAlignedPositionsOperation
RestrictIdentitiesAtAlignedPositionsOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictIdentitiesAtAlignedPositionsOperation
const > 
RestrictIdentitiesAtAlignedPositionsOperationCOP
 
typedef
utility::pointer::owning_ptr
< RestrictInterGroupVectorOperation
RestrictInterGroupVectorOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictInterGroupVectorOperation
const > 
RestrictInterGroupVectorOperationCOP
 
typedef
utility::pointer::owning_ptr
< RestrictNativeResiduesOperation
RestrictNativeResiduesOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictNonSurfaceToRepackingOperation
RestrictNonSurfaceToRepackingOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictOperationsBase
RestrictOperationsBaseOP
 
typedef
utility::pointer::owning_ptr
< RestrictOperationsBase const > 
RestrictOperationsBaseCOP
 
typedef
utility::pointer::owning_ptr
< RestrictResiduesToRepackingOperation
RestrictResiduesToRepackingOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictResiduesToRepackingOperation
const > 
RestrictResiduesToRepackingOperationCOP
 
typedef
utility::pointer::owning_ptr
< RestrictToAlignedSegmentsOperation
RestrictToAlignedSegmentsOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictToAlignedSegmentsOperation
const > 
RestrictToAlignedSegmentsOperationCOP
 
typedef
utility::pointer::owning_ptr
< RestrictToCDRH3Loop
RestrictToCDRH3LoopOP
 
typedef
utility::pointer::owning_ptr
< RestrictToInterface
RestrictToInterfaceOP
 
typedef
utility::pointer::owning_ptr
< RestrictToInterface
RestrictToInterfaceCOP
 
typedef
utility::pointer::owning_ptr
< RestrictToInterfaceOperation
RestrictToInterfaceOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictToInterfaceOperation
const > 
RestrictToInterfaceOperationCOP
 
typedef
utility::pointer::owning_ptr
< RestrictToInterfaceVectorOperation
RestrictToInterfaceVectorOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictToInterfaceVectorOperation
const > 
RestrictToInterfaceVectorOperationCOP
 
typedef
utility::pointer::owning_ptr
< RestrictToLoopsAndNeighbors
RestrictToLoopsAndNeighborsOP
 
typedef
utility::pointer::owning_ptr
< RestrictToNeighborhoodOperation
RestrictToNeighborhoodOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictToNeighborhoodOperation
const > 
RestrictToNeighborhoodOperationCOP
 
typedef
utility::pointer::owning_ptr
< RestrictToTerminiOperation
RestrictToTerminiOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictToTerminiOperation
const > 
RestrictToTerminiOperationCOP
 
typedef
utility::pointer::owning_ptr
< SelectBySASAOperation
SelectBySASAOperationOP
 
typedef
utility::pointer::owning_ptr
< SelectBySASAOperation const > 
SelectBySASAOperationCOP
 
typedef
utility::pointer::owning_ptr
< SeqprofConsensusOperation
SeqprofConsensusOperationOP
 
typedef
utility::pointer::owning_ptr
< RestrictConservedLowDdgOperation
RestrictConservedLowDdgOperationOP
 
typedef
utility::pointer::owning_ptr
< SetIGTypeOperation
SetIGTypeOperationOP
 
typedef
utility::pointer::owning_ptr
< SetIGTypeOperation const > 
SetIGTypeOperationCOP
 
typedef
utility::pointer::owning_ptr
< ThreadSequenceOperation
ThreadSequenceOperationOP
 
typedef
utility::pointer::owning_ptr
< ThreadSequenceOperation
const > 
ThreadSequenceOperationCOP
 

Functions

bool is_part (utility::vector1< core::Size > vec, core::Size pos)
 

Typedef Documentation

Function Documentation

bool protocols::toolbox::task_operations::is_part ( utility::vector1< core::Size vec,
core::Size  pos 
)