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core::pack::rotamer_set::RotamerSubsets Class Reference

#include <RotamerSubsets.hh>

Inheritance diagram for core::pack::rotamer_set::RotamerSubsets:
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Collaboration diagram for core::pack::rotamer_set::RotamerSubsets:
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Public Types

typedef task::PackerTaskCOP PackerTaskCOP
 
- Public Types inherited from core::pack::rotamer_set::FixbbRotamerSets
typedef RotamerSetsBase parent
 
typedef utility::vector1
< RotamerSetOP
RotamerSetVector
 

Public Member Functions

 RotamerSubsets (FixbbRotamerSets &source, utility::vector0< int > const &rotamer_subset)
 
 ~RotamerSubsets ()
 
virtual uint nrotamers () const
 
virtual uint nrotamers_for_moltenres (uint) const
 
virtual uint total_residue () const
 
virtual uint nmoltenres () const
 
virtual uint moltenres_2_resid (uint) const
 
virtual uint resid_2_moltenres (uint) const
 
virtual uint moltenres_for_rotamer (uint) const
 
virtual uint res_for_rotamer (uint) const
 
virtual
core::conformation::ResidueCOP 
rotamer (uint) const
 
virtual
core::conformation::ResidueCOP 
rotamer_for_moltenres (uint moltenres_id, uint rotamerid) const
 
virtual uint nrotamer_offset_for_moltenres (uint) const
 
virtual RotamerSetCOP rotamer_set_for_residue (uint resid) const
 
virtual RotamerSetOP rotamer_set_for_residue (uint resid)
 
virtual RotamerSetCOP rotamer_set_for_moltenresidue (uint moltenresid) const
 
virtual RotamerSetOP rotamer_set_for_moltenresidue (uint moltenresid)
 
RotamerSetVector::const_iterator begin ()
 
RotamerSetVector::const_iterator end ()
 
virtual uint rotid_on_moltenresidue (uint rotid) const
 convert rotid in full rotamer enumeration into rotamer id on its source residue More...
 
virtual uint moltenres_rotid_2_rotid (uint moltenres, uint moltenresrotid) const
 convert moltenres rotid to id in full rotamer enumeration More...
 
- Public Member Functions inherited from core::pack::rotamer_set::FixbbRotamerSets
 FixbbRotamerSets ()
 
virtual ~FixbbRotamerSets ()
 
- Public Member Functions inherited from core::pack::rotamer_set::RotamerSetsBase
 RotamerSetsBase ()
 
virtual ~RotamerSetsBase ()
 

Protected Member Functions

virtual utility::vector1< uint >
const & 
resid_2_moltenres_vector () const
 
virtual utility::vector1< uint >
const & 
moltenres_2_resid_vector () const
 

Private Member Functions

void update_offset_data ()
 

Private Attributes

uint nmoltenres_
 
uint total_residue_
 
uint nrotamers_
 
RotamerSetVector set_of_rotamer_sets_
 
utility::vector1< uintresid_2_moltenres_
 
utility::vector1< uintmoltenres_2_resid_
 
utility::vector1< uintnrotamer_offsets_
 
utility::vector1< uintmoltenres_for_rotamer_
 
utility::vector1< uintnrotamers_for_moltenres_
 

Member Typedef Documentation

Constructor & Destructor Documentation

core::pack::rotamer_set::RotamerSubsets::RotamerSubsets ( FixbbRotamerSets source,
utility::vector0< int > const &  rotamer_subset 
)
core::pack::rotamer_set::RotamerSubsets::~RotamerSubsets ( )

Member Function Documentation

RotamerSetVector::const_iterator core::pack::rotamer_set::RotamerSubsets::begin ( )
inlinevirtual
RotamerSetVector::const_iterator core::pack::rotamer_set::RotamerSubsets::end ( )
inlinevirtual
uint core::pack::rotamer_set::RotamerSubsets::moltenres_2_resid ( uint  mresid) const
virtual
virtual utility::vector1< uint > const& core::pack::rotamer_set::RotamerSubsets::moltenres_2_resid_vector ( ) const
inlineprotectedvirtual
uint core::pack::rotamer_set::RotamerSubsets::moltenres_for_rotamer ( uint  rotid) const
virtual
uint core::pack::rotamer_set::RotamerSubsets::moltenres_rotid_2_rotid ( uint  moltenres,
uint  moltenresrotid 
) const
virtual

convert moltenres rotid to id in full rotamer enumeration

Implements core::pack::rotamer_set::RotamerSetsBase.

References nrotamer_offsets_.

uint core::pack::rotamer_set::RotamerSubsets::nmoltenres ( ) const
virtual
uint core::pack::rotamer_set::RotamerSubsets::nrotamer_offset_for_moltenres ( uint  mresid) const
virtual
uint core::pack::rotamer_set::RotamerSubsets::nrotamers ( ) const
virtual
uint core::pack::rotamer_set::RotamerSubsets::nrotamers_for_moltenres ( uint  mresid) const
virtual
uint core::pack::rotamer_set::RotamerSubsets::res_for_rotamer ( uint  rotid) const
virtual
uint core::pack::rotamer_set::RotamerSubsets::resid_2_moltenres ( uint  resid) const
virtual
virtual utility::vector1< uint > const& core::pack::rotamer_set::RotamerSubsets::resid_2_moltenres_vector ( ) const
inlineprotectedvirtual
core::conformation::ResidueCOP core::pack::rotamer_set::RotamerSubsets::rotamer ( uint  rotid) const
virtual
core::conformation::ResidueCOP core::pack::rotamer_set::RotamerSubsets::rotamer_for_moltenres ( uint  moltenres_id,
uint  rotamerid 
) const
virtual
RotamerSetCOP core::pack::rotamer_set::RotamerSubsets::rotamer_set_for_moltenresidue ( uint  moltenresid) const
virtual
RotamerSetOP core::pack::rotamer_set::RotamerSubsets::rotamer_set_for_moltenresidue ( uint  moltenresid)
virtual
RotamerSetCOP core::pack::rotamer_set::RotamerSubsets::rotamer_set_for_residue ( uint  resid) const
virtual
RotamerSetOP core::pack::rotamer_set::RotamerSubsets::rotamer_set_for_residue ( uint  resid)
virtual
uint core::pack::rotamer_set::RotamerSubsets::rotid_on_moltenresidue ( uint  rotid) const
virtual

convert rotid in full rotamer enumeration into rotamer id on its source residue

Implements core::pack::rotamer_set::RotamerSetsBase.

References moltenres_for_rotamer_, and nrotamer_offsets_.

Referenced by rotamer().

uint core::pack::rotamer_set::RotamerSubsets::total_residue ( ) const
virtual
void core::pack::rotamer_set::RotamerSubsets::update_offset_data ( )
private

Member Data Documentation

utility::vector1< uint > core::pack::rotamer_set::RotamerSubsets::moltenres_2_resid_
private
utility::vector1< uint > core::pack::rotamer_set::RotamerSubsets::moltenres_for_rotamer_
private
uint core::pack::rotamer_set::RotamerSubsets::nmoltenres_
private
utility::vector1< uint > core::pack::rotamer_set::RotamerSubsets::nrotamer_offsets_
private
uint core::pack::rotamer_set::RotamerSubsets::nrotamers_
private

Referenced by nrotamers(), and update_offset_data().

utility::vector1< uint > core::pack::rotamer_set::RotamerSubsets::nrotamers_for_moltenres_
private
utility::vector1< uint > core::pack::rotamer_set::RotamerSubsets::resid_2_moltenres_
private
RotamerSetVector core::pack::rotamer_set::RotamerSubsets::set_of_rotamer_sets_
private
uint core::pack::rotamer_set::RotamerSubsets::total_residue_
private

Referenced by total_residue().


The documentation for this class was generated from the following files: