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pose_io.cc File Reference
#include <core/io/pdb/pose_io.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/AtomType.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/Energies.hh>
#include <ObjexxFCL/format.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <utility/exit.hh>
#include <utility/io/ozstream.hh>
#include <utility/vector1.hh>
#include <boost/foreach.hpp>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/tree/Atom.hh>

Namespaces

 ObjexxFCL
 C++ headers.
 
 ObjexxFCL::fmt
 
 core
 A class for defining atom parameters, known as atom_types.
 
 core::io
 
 core::io::pdb
 

Constant Groups

 ObjexxFCL
 C++ headers.
 
 ObjexxFCL::fmt
 
 core
 A class for defining atom parameters, known as atom_types.
 
 core::io
 
 core::io::pdb
 

Macros

#define foreach   BOOST_FOREACH
 

Functions

basic::Tracer core::io::pdb::TR_dump_pdb_dummy ("core.io.pdb.pose_io.dump_pdb_dummy")
 special Tracer instance acting as special param for all traced_dump_pdb functions More...
 
basic::Tracer core::io::pdb::TR ("core.io.pose_io")
 
void core::io::pdb::dump_pdb (pose::Pose const &pose, std::ostream &out, id::AtomID_Mask const &mask, std::string const &tag="1")
 Writes <pose> data. More...
 
void core::io::pdb::dump_bfactor_pdb (pose::Pose const &pose, id::AtomID_Map< Real > const &bfactor, std::ostream &out, std::string const &tag="1")
 Writes <pose> bfactor data. More...
 
void core::io::pdb::dump_pdb_residue (conformation::Residue const &rsd, Size &atom_number, std::ostream &out)
 Writes pdb data. More...
 
void core::io::pdb::dump_pdb (pose::Pose const &pose, std::ostream &out, std::string const &tag="1")
 Writes <pose> data. More...
 
void core::io::pdb::dump_pdb (pose::Pose const &pose, std::string const &filename, std::string const &tag="1")
 Writes the <pose> data to <filename> More...
 
void core::io::pdb::traced_dump_pdb (basic::Tracer const &tr, pose::Pose const &pose, std::ostream &out, std::string const &tag)
 dump_pdb depending on visibility of tracer More...
 
void core::io::pdb::traced_dump_pdb (basic::Tracer const &tr, pose::Pose const &pose, std::string const &filename, std::string const &tag)
 dump_pdb depending on visibility of tracer More...
 
core::Real core::io::pdb::restrict_prec (core::Real inval)
 Utility function to round a real value to the given precisions (number of digits after the decimal place) for output. For use solely by extract_scores() More...
 
void core::io::pdb::extract_scores (pose::Pose const &pose, utility::io::ozstream &out)
 Write <pose> Energies information into an output stream (e.g. the tail of a pdb file) More...
 
void core::io::pdb::dump_connect_info (pose::Pose const &pose, std::ostream &out, std::map< id::AtomID, Size > &atom_id_output)
 
void core::io::pdb::dump_connect_info (pose::Pose const &pose, std::ostream &out)
 dump_connect_info Figure out CONECT fields for PDB output – atoms that are bonded in Rosetta but won't look that way to RASMOL or Pymol because of distance – useful for centroid poses. More...
 

Detailed Description

Author

Macro Definition Documentation

#define foreach   BOOST_FOREACH