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core::chemical::ResidueDatabaseIO Member List

This is the complete list of members for core::chemical::ResidueDatabaseIO, including all inherited members.

atom_name_id_cache_core::chemical::ResidueDatabaseIOprivate
get_all_residues_in_database(utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIO
get_atom_name_from_database_atom_index(std::string residue_name, core::Size atom_index, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
get_version()core::chemical::ResidueDatabaseIO
initialize(utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIO
read_residue_type(std::string const &residue_type_set_name, std::string const &residue_type_name, core::chemical::ResidueType &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
read_residue_type_atom(std::string const &residue_type_set_name, std::string const &residue_type_name, core::chemical::ResidueType &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
read_residue_type_bond(std::string const &residue_type_set_name, std::string const &residue_type_name, core::chemical::ResidueType &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
read_residue_type_chi(std::string const &residue_type_set_name, std::string const &residue_type_name, core::chemical::ResidueType &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
read_residue_type_chi_rotamer(std::string const &residue_type_set_name, std::string const &residue_type_name, core::chemical::ResidueType &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
read_residue_type_cut_bond(std::string const &residue_type_set_name, std::string const &residue_type_name, core::chemical::ResidueType &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
read_residue_type_icoor(std::string const &residue_type_set_name, std::string const &residue_type_name, core::chemical::ResidueType &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
read_residue_type_properties(std::string const &residue_type_set_name, std::string const &residue_type_name, core::chemical::ResidueType &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
read_residue_type_proton_chi(std::string const &residue_type_set_name, std::string const &residue_type_name, core::chemical::ResidueType &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
read_residue_type_variant(std::string const &residue_type_set_name, std::string const &residue_type_name, core::chemical::ResidueType &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
read_residuetype_from_database(chemical::AtomTypeSetCAP atom_types, chemical::ElementSetCAP elements, chemical::MMAtomTypeSetCAP mm_atom_types, chemical::orbitals::OrbitalTypeSetCAP orbital_atom_types, std::string const &residue_type_set_name, std::string const &residue_type_name, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIO
report_residue_type(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
report_residue_type_atom(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
report_residue_type_bond(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
report_residue_type_chi(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
report_residue_type_chi_rotamer(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
report_residue_type_cut_bond(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
report_residue_type_icoor(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
report_residue_type_properties(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
report_residue_type_proton_chi(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
report_residue_type_variant(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIOprivate
ResidueDatabaseIO()core::chemical::ResidueDatabaseIO
version_core::chemical::ResidueDatabaseIOprivate
write_residue_type_atom_table_schema(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIOprivate
write_residue_type_bond_table_schema(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIOprivate
write_residue_type_chi_rotamer_table_schema(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIOprivate
write_residue_type_chi_table_schema(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIOprivate
write_residue_type_cut_bond_table_schema(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIOprivate
write_residue_type_icoor_table_schema(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIOprivate
write_residue_type_property_table_schema(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIOprivate
write_residue_type_proton_chi_table_schema(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIOprivate
write_residue_type_table_schema(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIOprivate
write_residue_type_variant_type_table_schema(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIOprivate
write_residuetype_to_database(std::string const &residue_type_set_name, core::chemical::ResidueType const &res_type, utility::sql_database::sessionOP db_session)core::chemical::ResidueDatabaseIO
write_schema_to_db(utility::sql_database::sessionOP db_session) const core::chemical::ResidueDatabaseIO
~ResidueDatabaseIO()core::chemical::ResidueDatabaseIOvirtual