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core::pack::task::operation::OperateOnCertainResidues Class Reference

#include <OperateOnCertainResidues.hh>

Inheritance diagram for core::pack::task::operation::OperateOnCertainResidues:
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Collaboration diagram for core::pack::task::operation::OperateOnCertainResidues:
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Public Types

typedef TaskOperation parent
 
typedef utility::tag::TagPtr TagPtr
 
typedef pose::Pose Pose
 
typedef utility::vector1< SizeResidueIndices
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr TagPtr
 
typedef pose::Pose Pose
 

Public Member Functions

 OperateOnCertainResidues ()
 
 OperateOnCertainResidues (ResLvlTaskOperationOP, ResFilterOP)
 
 OperateOnCertainResidues (OperateOnCertainResidues const &)
 
OperateOnCertainResiduesoperator= (OperateOnCertainResidues const &)
 
virtual ~OperateOnCertainResidues ()
 
virtual TaskOperationOP clone () const
 Create another task operation of the type matching the most-derived version of the class. More...
 
virtual void apply (Pose const &, PackerTask &) const
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void residue_indices (ResidueIndices const &)
 supports direct limitation of residues to be affected, without the need for a filter More...
 
ResidueIndicesresidue_indices ()
 
ResidueIndices const & residue_indices () const
 
void op (ResLvlTaskOperationCOP)
 sets the ResLvlTaskOperation that will be applied to residues More...
 
void filter (ResFilterCOP)
 sets an optional filter that is applied to each individual residue More...
 
virtual void parse_tag (TagPtr)
 Used to parse an xml-like tag to construct the ResLvlTaskOperation and the ResFilter. More...
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual ~TaskOperation ()
 
virtual void parse_def (utility::lua::LuaObject const &def)
 

Private Attributes

ResidueIndices residue_indices_
 
ResLvlTaskOperationOP op_
 
ResFilterOP filter_
 

Member Typedef Documentation

Constructor & Destructor Documentation

core::pack::task::operation::OperateOnCertainResidues::OperateOnCertainResidues ( )

Referenced by clone().

core::pack::task::operation::OperateOnCertainResidues::OperateOnCertainResidues ( ResLvlTaskOperationOP  rlto,
ResFilterOP  filter 
)
core::pack::task::operation::OperateOnCertainResidues::OperateOnCertainResidues ( OperateOnCertainResidues const &  src)
core::pack::task::operation::OperateOnCertainResidues::~OperateOnCertainResidues ( )
virtual

Member Function Documentation

void core::pack::task::operation::OperateOnCertainResidues::apply ( Pose const &  ,
PackerTask  
) const
virtual
TaskOperationOP core::pack::task::operation::OperateOnCertainResidues::clone ( ) const
virtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

References OperateOnCertainResidues().

void core::pack::task::operation::OperateOnCertainResidues::filter ( ResFilterCOP  filter_in)

sets an optional filter that is applied to each individual residue

References filter_.

void core::pack::task::operation::OperateOnCertainResidues::op ( ResLvlTaskOperationCOP  op_in)
OperateOnCertainResidues & core::pack::task::operation::OperateOnCertainResidues::operator= ( OperateOnCertainResidues const &  src)
void core::pack::task::operation::OperateOnCertainResidues::parse_tag ( TagPtr  tag)
virtual

Used to parse an xml-like tag to construct the ResLvlTaskOperation and the ResFilter.

tag parsing for factory construction of this class and its children

Example Tag syntax for parser as of Summer 2009

<OperateOnCertainResidues name="PROTEINnopack"> <PreventRepackingRLT> <ResidueHasProperty property="PROTEIN/"> </OperateOnCertainResidues>

Reimplemented from core::pack::task::operation::TaskOperation.

References core::sequence::end, filter_, core::pack::task::operation::ResFilterFactory::get_instance(), core::pack::task::operation::ResLvlTaskOperationFactory::get_instance(), core::pack::task::operation::ResFilterFactory::has_type(), core::pack::task::operation::ResFilterFactory::newResFilter(), op_, and core::pack::task::operation::TR().

void core::pack::task::operation::OperateOnCertainResidues::residue_indices ( ResidueIndices const &  )
ResidueIndices& core::pack::task::operation::OperateOnCertainResidues::residue_indices ( )
inline

References residue_indices_.

ResidueIndices const& core::pack::task::operation::OperateOnCertainResidues::residue_indices ( ) const
inline

References residue_indices_.

Member Data Documentation

ResFilterOP core::pack::task::operation::OperateOnCertainResidues::filter_
private

Referenced by apply(), filter(), operator=(), and parse_tag().

ResLvlTaskOperationOP core::pack::task::operation::OperateOnCertainResidues::op_
private

Referenced by apply(), op(), operator=(), and parse_tag().

ResidueIndices core::pack::task::operation::OperateOnCertainResidues::residue_indices_
private

Referenced by apply(), operator=(), and residue_indices().


The documentation for this class was generated from the following files: