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Public Member Functions | Private Attributes | List of all members
protocols::frag_picker::scores::ABEGO_SS_Score Class Reference

#include <ABEGO_SS_Score.hh>

Inheritance diagram for protocols::frag_picker::scores::ABEGO_SS_Score:
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Collaboration diagram for protocols::frag_picker::scores::ABEGO_SS_Score:
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Public Member Functions

 ABEGO_SS_Score (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string prediction_file_name, Size longest_vall_chunk)
 
 ~ABEGO_SS_Score ()
 
void do_caching (VallChunkOP)
 
bool cached_score (FragmentCandidateOP f, FragmentScoreMapOP empty_map)
 
void clean_up ()
 
virtual bool score (FragmentCandidateOP, FragmentScoreMapOP)
 Computes the score. More...
 
- Public Member Functions inherited from protocols::frag_picker::scores::CachingScoringMethod
 CachingScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
 
- Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoringMethod
 FragmentScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
 
std::string & get_score_name ()
 Returns a name of this scoring method. More...
 
Size get_id ()
 Returns an integer index assigned to this scoring method by a scoring manager. More...
 
void set_id (Size id)
 Sets a new integer index for this scoring method. More...
 
Size get_priority ()
 Returns a priority of this scoring method. More...
 
Real get_min_allowed_score ()
 Returns the lowest acceptable score value for this scoring method. More...
 
bool get_use_lowest ()
 Returns the boolean choice on using the above lowest acceptable score value. More...
 
void set_min_allowed_score (Real lowest_acceptable_value)
 Sets a new value of the lowest acceptable score. More...
 

Private Attributes

Size query_len_
 
Size n_classes_
 
utility::vector1
< quota::ABEGO_SS_MapOP
maps_
 
utility::vector1
< utility::vector1< Real > > 
ratios_
 
std::string cached_scores_id_
 
Matrix scores_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::frag_picker::scores::FragmentScoringMethod
Size id_
 
Size priority_
 
std::string name_
 
Real lowest_acceptable_value_
 
bool use_lowest_
 

Constructor & Destructor Documentation

protocols::frag_picker::scores::ABEGO_SS_Score::ABEGO_SS_Score ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
std::string  prediction_file_name,
Size  longest_vall_chunk 
)
inline
protocols::frag_picker::scores::ABEGO_SS_Score::~ABEGO_SS_Score ( )
inline

Member Function Documentation

bool protocols::frag_picker::scores::ABEGO_SS_Score::cached_score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
)
virtual
void protocols::frag_picker::scores::ABEGO_SS_Score::clean_up ( )
inlinevirtual
void protocols::frag_picker::scores::ABEGO_SS_Score::do_caching ( VallChunkOP  chunk)
virtual
bool protocols::frag_picker::scores::ABEGO_SS_Score::score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
)
virtual

Member Data Documentation

std::string protocols::frag_picker::scores::ABEGO_SS_Score::cached_scores_id_
private

Referenced by cached_score(), and do_caching().

utility::vector1<quota::ABEGO_SS_MapOP> protocols::frag_picker::scores::ABEGO_SS_Score::maps_
private

Referenced by ABEGO_SS_Score(), do_caching(), and score().

Size protocols::frag_picker::scores::ABEGO_SS_Score::n_classes_
private

Referenced by ABEGO_SS_Score().

Size protocols::frag_picker::scores::ABEGO_SS_Score::query_len_
private

Referenced by ABEGO_SS_Score(), and do_caching().

utility::vector1< utility::vector1<Real> > protocols::frag_picker::scores::ABEGO_SS_Score::ratios_
private

Referenced by ABEGO_SS_Score(), do_caching(), and score().

Matrix protocols::frag_picker::scores::ABEGO_SS_Score::scores_
private

The documentation for this class was generated from the following files: