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core::pack::task::PIKAA Class Reference

PIKAA allows residues specifed in a following string and packing. More...

#include <ResfileReader.hh>

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Public Member Functions

virtual ResfileCommandOP clone () const
 
virtual void initialize_from_tokens (utility::vector1< std::string > const &tokens, Size &which_token, Size resid)
 PIKAA allows residues specifed in a following string and packing the string should be formatted ALLCAPS with no spaces between residues using the standard single letter codes. More...
 
virtual void residue_action (PackerTask &, Size resid) const
 Modify the packer task with the command that was read in. More...
 
- Public Member Functions inherited from core::pack::task::ResfileCommand
virtual ~ResfileCommand ()
 Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
 

Static Public Member Functions

static std::string name ()
 

Private Attributes

utility::vector1< boolkeep_canonical_aas_
 
std::list< chemical::AAna_allowed_
 

Detailed Description

PIKAA allows residues specifed in a following string and packing.

Member Function Documentation

virtual ResfileCommandOP core::pack::task::PIKAA::clone ( ) const
inlinevirtual
void core::pack::task::PIKAA::initialize_from_tokens ( utility::vector1< std::string > const &  tokens,
Size which_token,
Size  resid 
)
virtual

PIKAA allows residues specifed in a following string and packing the string should be formatted ALLCAPS with no spaces between residues using the standard single letter codes.

Implements core::pack::task::ResfileCommand.

References core::chemical::aa_from_oneletter_code(), core::pack::task::get_token(), core::chemical::na_ade, core::chemical::na_cyt, core::chemical::na_gua, core::chemical::na_thy, core::chemical::num_canonical_aas, core::chemical::oneletter_code_specifies_aa(), core::pack::task::onError(), and core::pack::task::TR().

static std::string core::pack::task::PIKAA::name ( )
inlinestatic
void core::pack::task::PIKAA::residue_action ( PackerTask ,
Size  resid 
) const
virtual

Member Data Documentation

utility::vector1< bool > core::pack::task::PIKAA::keep_canonical_aas_
private
std::list< chemical::AA > core::pack::task::PIKAA::na_allowed_
private

The documentation for this class was generated from the following files: