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protocols::rosetta_scripts::ParsedProtocol Member List

This is the complete list of members for protocols::rosetta_scripts::ParsedProtocol, including all inherited members.

add_mover(protocols::moves::MoverCOP mover, std::string const mover_name, protocols::filters::FilterOP filter)protocols::rosetta_scripts::ParsedProtocol
apply(Pose &pose)protocols::rosetta_scripts::ParsedProtocolvirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
apply_filter(Pose &pose, mover_filter_pair const &mover_pair)protocols::rosetta_scripts::ParsedProtocolprivate
apply_mover_filter_pair(Pose &pose, mover_filter_pair const &mover_pair)protocols::rosetta_scripts::ParsedProtocolprivate
apply_probability(utility::vector1< core::Real > const a)protocols::rosetta_scripts::ParsedProtocol
apply_probability()protocols::rosetta_scripts::ParsedProtocol
apply_probability_protocols::rosetta_scripts::ParsedProtocolprivate
begin()protocols::rosetta_scripts::ParsedProtocol
begin() const protocols::rosetta_scripts::ParsedProtocol
call_order() const protocols::rosetta_scripts::ParsedProtocolinline
call_order_protocols::rosetta_scripts::ParsedProtocolprivate
clear()protocols::rosetta_scripts::ParsedProtocolinline
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::rosetta_scripts::ParsedProtocolvirtual
const_iterator typedefprotocols::rosetta_scripts::ParsedProtocol
create()protocols::moves::Movervirtual
end()protocols::rosetta_scripts::ParsedProtocol
end() const protocols::rosetta_scripts::ParsedProtocol
Filters_map typedefprotocols::moves::Mover
final_score(core::pose::Pose &pose) const protocols::rosetta_scripts::ParsedProtocol
final_scorefxn(core::scoring::ScoreFunctionCOP scorefxn)protocols::rosetta_scripts::ParsedProtocol
final_scorefxn() const protocols::rosetta_scripts::ParsedProtocol
final_scorefxn_protocols::rosetta_scripts::ParsedProtocolprivate
finish_protocol(Pose &pose)protocols::rosetta_scripts::ParsedProtocolprivate
fresh_instance() const protocols::rosetta_scripts::ParsedProtocolinlinevirtual
get_additional_output()protocols::rosetta_scripts::ParsedProtocolvirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_mover(core::Size const mover_number) const protocols::rosetta_scripts::ParsedProtocolinline
get_name() const protocols::rosetta_scripts::ParsedProtocolvirtual
get_native_pose() const protocols::moves::Mover
get_resid() const protocols::moves::ResIdvirtual
get_resid()protocols::moves::ResIdvirtual
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
iterator typedefprotocols::rosetta_scripts::ParsedProtocol
last_attempted_mover_idx()protocols::rosetta_scripts::ParsedProtocolinline
last_attempted_mover_idx(core::Size const s)protocols::rosetta_scripts::ParsedProtocolinline
last_attempted_mover_idx_protocols::rosetta_scripts::ParsedProtocolprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
mode() const protocols::rosetta_scripts::ParsedProtocolinline
mode_protocols::rosetta_scripts::ParsedProtocolprivate
modifiable() const protocols::moves::ResIdvirtual
modifiable(bool const u)protocols::moves::ResIdvirtual
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
mover_filter_pair typedefprotocols::rosetta_scripts::ParsedProtocol
MoverFilterVector typedefprotocols::rosetta_scripts::ParsedProtocol
movers_protocols::rosetta_scripts::ParsedProtocolprivate
name()protocols::moves::Moverinlinestatic
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(utility::tag::TagPtr const, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)protocols::rosetta_scripts::ParsedProtocolvirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
ParsedProtocol()protocols::rosetta_scripts::ParsedProtocol
Pose typedefprotocols::rosetta_scripts::ParsedProtocol
PoseCOP typedefprotocols::moves::Mover
random_order_protocol(Pose &pose)protocols::rosetta_scripts::ParsedProtocolprivate
random_single_protocol(Pose &pose)protocols::rosetta_scripts::ParsedProtocolprivate
Real typedefprotocols::rosetta_scripts::ParsedProtocol
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
report_all(Pose const &pose) const protocols::rosetta_scripts::ParsedProtocol
report_all_sm(std::map< std::string, core::Real > &score_map, Pose const &pose) const protocols::rosetta_scripts::ParsedProtocol
report_call_order() const protocols::rosetta_scripts::ParsedProtocolinline
report_call_order(bool const c)protocols::rosetta_scripts::ParsedProtocolinline
report_call_order_protocols::rosetta_scripts::ParsedProtocolprivate
report_filters_to_job(Pose const &pose) const protocols::rosetta_scripts::ParsedProtocol
reset_status()protocols::moves::Mover
ResId()protocols::moves::ResId
ResId(core::Size const r)protocols::moves::ResId
save_state(SerializableState &state)protocols::moves::Movervirtual
sequence_protocol(Pose &pose, utility::vector1< mover_filter_pair >::const_iterator mover_it_in)protocols::rosetta_scripts::ParsedProtocolprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_resid(core::Size const resid)protocols::rosetta_scripts::ParsedProtocolvirtual
size()protocols::rosetta_scripts::ParsedProtocolinline
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
~Mover()protocols::moves::Movervirtual
~ParsedProtocol()protocols::rosetta_scripts::ParsedProtocolvirtual
~ResId()protocols::moves::ResIdvirtual