Rosetta 3.5
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core::scoring::dna::DNATorsionPotential Member List

This is the complete list of members for core::scoring::dna::DNATorsionPotential, including all inherited members.

add_dna_base_distance_constraints(pose::Pose &pose, constraints::ConstraintSet &cst_set) const core::scoring::dna::DNATorsionPotentialprivate
add_DNA_torsion_constraint(pose::Pose &pose, Size const i, constraints::ConstraintSet &cst_set, Size const dna_torsion_number, utility::vector1< constraints::AmberPeriodicFuncOP > const &gaussian_parameter_set) const core::scoring::dna::DNATorsionPotentialprivate
add_dna_torsion_tethers(pose::Pose &pose, constraints::ConstraintSet &cst_set) const core::scoring::dna::DNATorsionPotentialprivate
add_sugar_ring_closure_constraints(conformation::Residue const &rsd, constraints::ConstraintSet &cst_set) const core::scoring::dna::DNATorsionPotential
add_sugar_ring_closure_constraints(pose::Pose &pose, constraints::ConstraintSet &cst_set) const core::scoring::dna::DNATorsionPotentialprivate
alpha_atom_names_core::scoring::dna::DNATorsionPotentialprivate
alpha_components()core::scoring::dna::DNATorsionPotentialinline
alpha_components_core::scoring::dna::DNATorsionPotentialprivate
beta_atom_names_core::scoring::dna::DNATorsionPotentialprivate
beta_components()core::scoring::dna::DNATorsionPotentialinline
beta_components_core::scoring::dna::DNATorsionPotentialprivate
c2star_c3star_bond_length_core::scoring::dna::DNATorsionPotentialprivate
c2star_c3star_dist_harm_func_core::scoring::dna::DNATorsionPotentialprivate
c2star_c3star_sd_core::scoring::dna::DNATorsionPotentialprivate
c3star_c2star_c1star_angle_harm_func_core::scoring::dna::DNATorsionPotentialprivate
c3star_c2star_c1star_bond_angle_core::scoring::dna::DNATorsionPotentialprivate
c4star_c3star_c2star_angle_harm_func_core::scoring::dna::DNATorsionPotentialprivate
c4star_c3star_c2star_bond_angle_core::scoring::dna::DNATorsionPotentialprivate
delta_atom_names_core::scoring::dna::DNATorsionPotentialprivate
delta_components()core::scoring::dna::DNATorsionPotentialinline
delta_components_core::scoring::dna::DNATorsionPotentialprivate
delta_cutoff() const core::scoring::dna::DNATorsionPotentialinline
DELTA_CUTOFF_core::scoring::dna::DNATorsionPotentialprivate
DNATorsionPotential()core::scoring::dna::DNATorsionPotential
epsilon_atom_names_core::scoring::dna::DNATorsionPotentialprivate
epsilon_components()core::scoring::dna::DNATorsionPotentialinline
epsilon_components_core::scoring::dna::DNATorsionPotentialprivate
gamma_atom_names_core::scoring::dna::DNATorsionPotentialprivate
gamma_components()core::scoring::dna::DNATorsionPotentialinline
gamma_components_core::scoring::dna::DNATorsionPotentialprivate
get_atom_ids_by_torsion(Size const dna_torsion_number, pose::Pose &pose, Size const resid, id::AtomID &id1, id::AtomID &id2, id::AtomID &id3, id::AtomID &id4) const core::scoring::dna::DNATorsionPotentialprivate
init_dna_torsion_parameters()core::scoring::dna::DNATorsionPotentialprivate
nu0_atom_names_core::scoring::dna::DNATorsionPotentialprivate
nu0_components()core::scoring::dna::DNATorsionPotentialinline
nu0_components_core::scoring::dna::DNATorsionPotentialprivate
nu1_atom_names_core::scoring::dna::DNATorsionPotentialprivate
nu1_components()core::scoring::dna::DNATorsionPotentialinline
nu1_components_core::scoring::dna::DNATorsionPotentialprivate
nu2_atom_names_core::scoring::dna::DNATorsionPotentialprivate
nu2_components()core::scoring::dna::DNATorsionPotentialinline
nu2_components_core::scoring::dna::DNATorsionPotentialprivate
nu3_atom_names_core::scoring::dna::DNATorsionPotentialprivate
nu3_components()core::scoring::dna::DNATorsionPotentialinline
nu3_components_core::scoring::dna::DNATorsionPotentialprivate
nu4_atom_names_core::scoring::dna::DNATorsionPotentialprivate
nu4_components()core::scoring::dna::DNATorsionPotentialinline
nu4_components_core::scoring::dna::DNATorsionPotentialprivate
o3star_c3star_c2star_angle_harm_func_core::scoring::dna::DNATorsionPotentialprivate
o3star_c3star_c2star_bond_angle_core::scoring::dna::DNATorsionPotentialprivate
scale_dna_torsion_sd_core::scoring::dna::DNATorsionPotentialprivate
scale_dna_torsion_tether_core::scoring::dna::DNATorsionPotentialprivate
setup_constraints(pose::Pose &pose, constraints::ConstraintSetOP &dna_torsion_constraints, constraints::ConstraintSetOP &dna_sugar_close_constraints, constraints::ConstraintSetOP &dna_base_distance_constraints) const core::scoring::dna::DNATorsionPotential
verbose_core::scoring::dna::DNATorsionPotentialprivate
zeta_atom_names_core::scoring::dna::DNATorsionPotentialprivate
zeta_components()core::scoring::dna::DNATorsionPotentialinline
zeta_components_core::scoring::dna::DNATorsionPotentialprivate
~DNATorsionPotential()core::scoring::dna::DNATorsionPotentialinline