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core::scoring::methods::MembraneEnvSmoothEnergy Member List

This is the complete list of members for core::scoring::methods::MembraneEnvSmoothEnergy, including all inherited members.

atomic_interaction_cutoff() const core::scoring::methods::MembraneEnvSmoothEnergy
calc_energy(conformation::Residue const &rsd, pose::Pose const &pose, Real const neighbor_count, chemical::AA const aa, Real &score, Real &dscore_dneighbor_count) const core::scoring::methods::MembraneEnvSmoothEnergyprivate
clone() const core::scoring::methods::MembraneEnvSmoothEnergyvirtual
ContextDependentOneBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::ContextDependentOneBodyEnergy
defines_dof_derivatives(pose::Pose const &p) const core::scoring::methods::OneBodyEnergyvirtual
defines_high_order_terms(pose::Pose const &) const core::scoring::methods::EnergyMethodvirtual
defines_score_for_residue(conformation::Residue const &) const core::scoring::methods::OneBodyEnergyvirtual
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
EnergyMethod(EnergyMethod const &src)core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, kinematics::DomainMap const &, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const core::scoring::methods::MembraneEnvSmoothEnergyvirtual
eval_residue_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) const core::scoring::methods::OneBodyEnergyvirtual
eval_residue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) const core::scoring::methods::OneBodyEnergyvirtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const core::scoring::methods::EnergyMethodvirtual
finalize_total_energy(pose::Pose &pose, ScoreFunction const &sfxn, EnergyMap &total_energy) const core::scoring::methods::EnergyMethodvirtual
increment_f1_f2_for_atom_pair(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weighted_dScore_dN, Vector &F1, Vector &F2) const core::scoring::methods::MembraneEnvSmoothEnergyprivate
indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const core::scoring::methods::MembraneEnvSmoothEnergyvirtual
mem_env_log10_core::scoring::methods::MembraneEnvSmoothEnergyprivate
MembraneEnvSmoothEnergy()core::scoring::methods::MembraneEnvSmoothEnergy
method_type() const core::scoring::methods::ContextDependentOneBodyEnergyvirtual
minimize_in_whole_structure_context(pose::Pose const &) const core::scoring::methods::EnergyMethodvirtual
OneBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::OneBodyEnergy
parent typedefcore::scoring::methods::MembraneEnvSmoothEnergy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const core::scoring::methods::EnergyMethodvirtual
representative_atom_name(chemical::AA const aa) const core::scoring::methods::MembraneEnvSmoothEnergyprivate
requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) const core::scoring::methods::OneBodyEnergyvirtual
requires_a_setup_for_scoring_for_residue_opportunity(pose::Pose const &pose) const core::scoring::methods::OneBodyEnergyvirtual
residue_dEdN_core::scoring::methods::MembraneEnvSmoothEnergymutableprivate
residue_E_core::scoring::methods::MembraneEnvSmoothEnergymutableprivate
residue_energy(conformation::Residue const &rsd, pose::Pose const &, EnergyMap &) const core::scoring::methods::MembraneEnvSmoothEnergyvirtual
residue_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap &emap) const core::scoring::methods::OneBodyEnergyvirtual
residue_N_core::scoring::methods::MembraneEnvSmoothEnergymutableprivate
score_types() const core::scoring::methods::EnergyMethodinline
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethodprotected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sf) const core::scoring::methods::MembraneEnvSmoothEnergyvirtual
setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) const core::scoring::methods::OneBodyEnergyvirtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const core::scoring::methods::EnergyMethodvirtual
setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &, ScoreFunction const &, kinematics::MinimizerMapBase const &, ResSingleMinimizationData &) const core::scoring::methods::OneBodyEnergyvirtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const core::scoring::methods::EnergyMethodvirtual
setup_for_scoring(pose::Pose &pose, ScoreFunction const &) const core::scoring::methods::MembraneEnvSmoothEnergyvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) const core::scoring::methods::OneBodyEnergyvirtual
sigmoidish_neighbor(DistanceSquared const sqdist) const core::scoring::methods::MembraneEnvSmoothEnergyprivate
update_residue_for_packing(pose::Pose &, Size resid) const core::scoring::methods::EnergyMethodvirtual
use_extended_residue_energy_interface() const core::scoring::methods::OneBodyEnergyvirtual
version() const core::scoring::methods::MembraneEnvSmoothEnergyprivatevirtual
~EnergyMethod()core::scoring::methods::EnergyMethodvirtual
~OneBodyEnergy()core::scoring::methods::OneBodyEnergyvirtual