core::fragment::OrderedFragSet Member List

This is the complete list of members for core::fragment::OrderedFragSet, including all inherited members.

add(FrameOP aFrame)	core::fragment::FragSet
add(FrameList const &frames)	core::fragment::FragSet
add(FragSet const &frames)	core::fragment::FragSet
add(FragID const &)	core::fragment::FragSet
add(FragID_List &list)	core::fragment::FragSet	inline
add_(FrameOP aframe)	core::fragment::OrderedFragSet	protectedvirtual
begin() const	core::fragment::OrderedFragSet	virtual
clone() const	core::fragment::OrderedFragSet	virtual
empty() const	core::fragment::OrderedFragSet	virtual
empty_clone() const	core::fragment::OrderedFragSet	virtual
end() const	core::fragment::OrderedFragSet	virtual
FragSet()	core::fragment::FragSet	inline
FrameMap typedef	core::fragment::OrderedFragSet
frames(Size pos, FrameList &frames) const	core::fragment::OrderedFragSet	virtual
frames_	core::fragment::OrderedFragSet	private
generate_insert_map(kinematics::MoveMap const &mm, InsertMap &insert_map, InsertSize &insert_size) const	core::fragment::FragSet	virtual
insert_fragID_list(FragID_List &list)	core::fragment::FragSet
max_frag_length() const	core::fragment::FragSet	inline
max_pos() const	core::fragment::FragSet	inline
min_pos() const	core::fragment::FragSet	inline
nr_frames() const	core::fragment::FragSet
OrderedFragSet()	core::fragment::OrderedFragSet
Parent typedef	core::fragment::OrderedFragSet
region(kinematics::MoveMap const &mm, core::Size start, core::Size end, core::Size, core::Size, FrameList &frames) const	core::fragment::OrderedFragSet	virtual
region_all(core::Size start, core::Size end, core::Size min_overlap, core::Size min_length, FrameList &frames) const	core::fragment::FragSet	virtual
region_simple(core::Size start, core::Size end, FrameList &frames) const	core::fragment::FragSet	inlinevirtual
set_max_frag_length(Size setting)	core::fragment::FragSet	inlineprotected
set_max_pos(Size pos)	core::fragment::FragSet	inlineprotected
set_min_pos(Size pos)	core::fragment::FragSet	inlineprotected
size() const	core::fragment::FragSet
~FragSet()	core::fragment::FragSet	inlinevirtual
~OrderedFragSet()	core::fragment::OrderedFragSet