#include <ResidueGridScoresFeatures.hh>
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| | ResidueGridScoresFeatures () |
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| | ResidueGridScoresFeatures (ResidueGridScoresFeatures const &src) |
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| virtual | ~ResidueGridScoresFeatures () |
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| std::string | type_name () const |
| | return string with class name More...
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| void | write_schema_to_db (utility::sql_database::sessionOP db_session) const |
| | generate the table schemas and write them to the database More...
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| utility::vector1< std::string > | features_reporter_dependencies () const |
| | return the set of features reporters that are required to also already be extracted by the time this one is used. More...
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| core::Size | report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session) |
| | collect all the feature data for the pose More...
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| void | parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) |
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| virtual | ~FeaturesReporter () |
| | Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
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| virtual std::string | schema () const |
| | return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...
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| core::Size | report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP) |
| | collect all the feature data for the pose. More...
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| virtual void | load_into_pose (utility::sql_database::sessionOP, boost::uuids::uuid, core::pose::Pose &) |
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| virtual void | delete_record (boost::uuids::uuid, utility::sql_database::sessionOP) |
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| std::string | find_tag (core::pose::Pose const &pose) const |
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| void | delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session) |
| | a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...
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| protocols::features::ResidueGridScoresFeatures::ResidueGridScoresFeatures |
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| protocols::features::ResidueGridScoresFeatures::~ResidueGridScoresFeatures |
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| utility::vector1< std::string > protocols::features::ResidueGridScoresFeatures::features_reporter_dependencies |
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const |
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| core::Size protocols::features::ResidueGridScoresFeatures::report_features |
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core::pose::Pose const & |
pose, |
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utility::vector1< bool > const & |
relevant_residues, |
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boost::uuids::uuid |
struct_id, |
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utility::sql_database::sessionOP |
db_session |
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collect all the feature data for the pose
Implements protocols::features::FeaturesReporter.
References protocols::qsar::scoring_grid::GridManager::atom_score(), chain_, core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), protocols::geometry::downstream_centroid_by_jump(), core::pose::get_chain_id_from_chain(), protocols::qsar::scoring_grid::GridManager::get_instance(), core::pose::get_jump_id_from_chain(), protocols::qsar::scoring_grid::GridManager::initialize_all_grids(), core::pose::Pose::residue(), protocols::qsar::scoring_grid::GridManager::size(), and protocols::qsar::scoring_grid::GridManager::update_grids().
| std::string protocols::features::ResidueGridScoresFeatures::type_name |
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const |
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| void protocols::features::ResidueGridScoresFeatures::write_schema_to_db |
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utility::sql_database::sessionOP |
db_session) | |
const |
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| char protocols::features::ResidueGridScoresFeatures::chain_ |
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private |
The documentation for this class was generated from the following files:
Public Member Functions inherited from protocols::features::FeaturesReporter
1.8.4