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ExtendAlignerSW.hh File Reference

class definition for a class that aligns two takes a seed sequence alignment and extends it using the Smith-Waterman alignment algorithm. More...

#include <core/types.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/Aligner.hh>
#include <core/sequence/DP_Matrix.hh>
#include <core/sequence/Sequence.fwd.hh>
#include <core/sequence/SequenceAlignment.fwd.hh>

Classes

class  core::sequence::ExtendAlignerSW
 

Namespaces

 core
 A class for defining atom parameters, known as atom_types.
 
 core::sequence
 

Constant Groups

 core
 A class for defining atom parameters, known as atom_types.
 
 core::sequence
 

Detailed Description

class definition for a class that aligns two takes a seed sequence alignment and extends it using the Smith-Waterman alignment algorithm.

Author
James Thompson