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protocols::antibody::CDRH3Modeler Member List

This is the complete list of members for protocols::antibody::CDRH3Modeler, including all inherited members.

antibody_build_protocols::antibody::CDRH3Modelerprivate
antibody_in_protocols::antibody::CDRH3Modelerprivate
antibody_modeling_insert_ter()protocols::antibody::CDRH3Modeler
antibody_refine_protocols::antibody::CDRH3Modelerprivate
apply(core::pose::Pose &pose_in)protocols::antibody::CDRH3Modelervirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
apply_centroid_mode_protocols::antibody::CDRH3Modelerprivate
apply_fullatom_mode_protocols::antibody::CDRH3Modelerprivate
base_protocols::antibody::CDRH3Modelerprivate
benchmark_protocols::antibody::CDRH3Modelerprivate
build_centroid_loop()protocols::antibody::CDRH3Modeler
build_fullatom_loop()protocols::antibody::CDRH3Modeler
c_ter_stem_protocols::antibody::CDRH3Modelerprivate
CDR_H3_filter(const core::pose::Pose &pose_in, core::Size const loop_begin, core::Size const size, char const light_chain= 'L')protocols::antibody::CDRH3Modeler
cdr_h3_frags_protocols::antibody::CDRH3Modelerprivate
CDRH3Modeler(utility::vector1< core::fragment::FragSetOP > cdr_h3_frags)protocols::antibody::CDRH3Modeler
cen_cst_protocols::antibody::CDRH3Modelerprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
create()protocols::moves::Movervirtual
current_loop_is_H3_protocols::antibody::CDRH3Modelerprivate
cutoff_3_protocols::antibody::CDRH3Modelerprivate
cutoff_9_protocols::antibody::CDRH3Modelerprivate
cutpoint_separation(core::pose::Pose &pose_in, Size cutpoint)protocols::antibody::CDRH3Modeler
cutpoints_separation()protocols::antibody::CDRH3Modeler
decoy_loop_cutpoint_protocols::antibody::CDRH3Modelerprivate
dle_flag_protocols::antibody::CDRH3Modelerprivate
do_h3_modeling_protocols::antibody::CDRH3Modelerprivate
docking_local_refine_protocols::antibody::CDRH3Modelerprivate
enable_benchmark_mode(bool setting)protocols::antibody::CDRH3Modelerinline
fa_scorefxn_protocols::antibody::CDRH3Modelerprivate
Filters_map typedefprotocols::moves::Mover
flank_relax_protocols::antibody::CDRH3Modelerprivate
freeze_h3_protocols::antibody::CDRH3Modelerprivate
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::antibody::CDRH3Modelervirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
H3_base_libraryprotocols::antibody::CDRH3Modeler
H3_filter_protocols::antibody::CDRH3Modelerprivate
h3_flank_protocols::antibody::CDRH3Modelerprivate
h3_random_cut_protocols::antibody::CDRH3Modelerprivate
high_cst_protocols::antibody::CDRH3Modelerprivate
highres_scorefxn_protocols::antibody::CDRH3Modelerprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
init_task_factory_protocols::antibody::CDRH3Modelerprivate
is_camelid_protocols::antibody::CDRH3Modelerprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loop_centroid_relax(core::pose::Pose &pose_in, core::Size const loop_begin, core::Size const loop_end)protocols::antibody::CDRH3Modeler
loop_fa_relax(core::pose::Pose &pose_in, core::Size const loop_begin, core::Size const loop_end)protocols::antibody::CDRH3Modeler
loops_flag_protocols::antibody::CDRH3Modelerprivate
lowres_scorefxn_protocols::antibody::CDRH3Modelerprivate
min_base_relax_protocols::antibody::CDRH3Modelerprivate
model_h3(bool setting)protocols::antibody::CDRH3Modelerinline
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
refine_input_loop_protocols::antibody::CDRH3Modelerprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
save_state(SerializableState &state)protocols::moves::Movervirtual
scored_frag_close(core::pose::Pose &pose_in, loops::Loop const trimmed_cdr_h3)protocols::antibody::CDRH3Modeler
set_camelid(bool setting)protocols::antibody::CDRH3Modelerinline
set_centroid_loop_building(bool setting)protocols::antibody::CDRH3Modelerinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_default()protocols::antibody::CDRH3Modeler
set_fullatom_loop_building(bool setting)protocols::antibody::CDRH3Modelerinline
set_highres_score_func(core::scoring::ScoreFunctionOP highres_scorefxn)protocols::antibody::CDRH3Modeler
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_lowres_score_func(core::scoring::ScoreFunctionOP lowres_scorefxn)protocols::antibody::CDRH3Modeler
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
setup_packer_task(core::pose::Pose &pose_in)protocols::antibody::CDRH3Modeler
snug_fit_protocols::antibody::CDRH3Modelerprivate
start_pose_protocols::antibody::CDRH3Modelerprivate
store_H3_cter_fragment(utility::vector1< core::fragment::FragData > &base_library_in)protocols::antibody::CDRH3Modeler
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
template_pose_protocols::antibody::CDRH3Modelerprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
tf_protocols::antibody::CDRH3Modelerprivate
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
~CDRH3Modeler()protocols::antibody::CDRH3Modeler
~Mover()protocols::moves::Movervirtual