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Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::ResidueIEFilter Class Reference

#include <ResidueIEFilter.hh>

Inheritance diagram for protocols::simple_filters::ResidueIEFilter:
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Collaboration diagram for protocols::simple_filters::ResidueIEFilter:
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Public Member Functions

 ResidueIEFilter ()
 
 ResidueIEFilter (utility::vector1< core::Size > const resnums, std::string const restype, core::scoring::ScoreFunctionCOP scorefxn, core::scoring::ScoreType const score_type, core::Real const threshold, bool const whole_pose=false, bool const whole_interface=false, core::Size const rb_jump=1, core::Real const interface_distance_cutoff=8.0, core::Real max_penalty=0.0, core::Real penalty_factor=1.0)
 
 ResidueIEFilter (ResidueIEFilter const &init)
 
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
core::Real compute (core::pose::Pose const &pose) const
 
virtual ~ResidueIEFilter ()
 
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
utility::vector1< core::Sizeresnums () const
 
core::scoring::ScoreFunctionOP scorefxn () const
 
core::scoring::ScoreType score_type () const
 
core::Real threshold () const
 
void resnums (utility::vector1< core::Size > const &rn)
 
void scorefxn (core::scoring::ScoreFunctionOP scorefxn)
 
void score_type (core::scoring::ScoreType score_type)
 
void threshold (core::Real const th)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

utility::vector1< core::Sizeresnums_
 
std::string restype_
 
core::scoring::ScoreFunctionOP scorefxn_
 
core::scoring::ScoreType score_type_
 
core::Real threshold_
 
bool whole_pose_
 
bool whole_interface_
 
core::Size rb_jump_
 
core::Real interface_distance_cutoff_
 
core::Real max_penalty_
 
core::Real penalty_factor_
 
bool use_resE_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::ResidueIEFilter::ResidueIEFilter ( )
inline

Referenced by clone(), and fresh_instance().

protocols::simple_filters::ResidueIEFilter::ResidueIEFilter ( utility::vector1< core::Size > const  resnums,
std::string const  restype,
core::scoring::ScoreFunctionCOP  scorefxn,
core::scoring::ScoreType const  score_type,
core::Real const  threshold,
bool const  whole_pose = false,
bool const  whole_interface = false,
core::Size const  rb_jump = 1,
core::Real const  interface_distance_cutoff = 8.0,
core::Real  max_penalty = 0.0,
core::Real  penalty_factor = 1.0 
)
protocols::simple_filters::ResidueIEFilter::ResidueIEFilter ( ResidueIEFilter const &  init)

References scorefxn_.

protocols::simple_filters::ResidueIEFilter::~ResidueIEFilter ( )
virtual

Member Function Documentation

bool protocols::simple_filters::ResidueIEFilter::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), and max_penalty_.

filters::FilterOP protocols::simple_filters::ResidueIEFilter::clone ( ) const
inlinevirtual

Implements protocols::filters::Filter.

References ResidueIEFilter().

Referenced by parse_my_tag().

core::Real protocols::simple_filters::ResidueIEFilter::compute ( core::pose::Pose const &  pose) const
filters::FilterOP protocols::simple_filters::ResidueIEFilter::fresh_instance ( ) const
inlinevirtual
void protocols::simple_filters::ResidueIEFilter::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &  pose 
)
virtual
void protocols::simple_filters::ResidueIEFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute(), and restype_.

core::Real protocols::simple_filters::ResidueIEFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

utility::vector1< core::Size > protocols::simple_filters::ResidueIEFilter::resnums ( ) const

References resnums_.

void protocols::simple_filters::ResidueIEFilter::resnums ( utility::vector1< core::Size > const &  rn)

References resnums_.

core::scoring::ScoreType protocols::simple_filters::ResidueIEFilter::score_type ( ) const

References score_type_.

Referenced by score_type().

void protocols::simple_filters::ResidueIEFilter::score_type ( core::scoring::ScoreType  score_type)

References score_type(), and score_type_.

core::scoring::ScoreFunctionOP protocols::simple_filters::ResidueIEFilter::scorefxn ( ) const

References scorefxn_.

Referenced by scorefxn().

void protocols::simple_filters::ResidueIEFilter::scorefxn ( core::scoring::ScoreFunctionOP  scorefxn)

References scorefxn(), and scorefxn_.

core::Real protocols::simple_filters::ResidueIEFilter::threshold ( ) const

References threshold_.

void protocols::simple_filters::ResidueIEFilter::threshold ( core::Real const  th)

References threshold_.

Member Data Documentation

core::Real protocols::simple_filters::ResidueIEFilter::interface_distance_cutoff_
private

Referenced by compute(), and parse_my_tag().

core::Real protocols::simple_filters::ResidueIEFilter::max_penalty_
private

Referenced by apply(), and parse_my_tag().

core::Real protocols::simple_filters::ResidueIEFilter::penalty_factor_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::simple_filters::ResidueIEFilter::rb_jump_
private

Referenced by compute(), and parse_my_tag().

utility::vector1<core::Size> protocols::simple_filters::ResidueIEFilter::resnums_
mutableprivate

Referenced by compute(), parse_my_tag(), and resnums().

std::string protocols::simple_filters::ResidueIEFilter::restype_
private

Referenced by compute(), parse_my_tag(), and report().

core::scoring::ScoreType protocols::simple_filters::ResidueIEFilter::score_type_
private
core::scoring::ScoreFunctionOP protocols::simple_filters::ResidueIEFilter::scorefxn_
private
core::Real protocols::simple_filters::ResidueIEFilter::threshold_
private

Referenced by compute(), parse_my_tag(), and threshold().

bool protocols::simple_filters::ResidueIEFilter::use_resE_
private
bool protocols::simple_filters::ResidueIEFilter::whole_interface_
private

Referenced by compute(), and parse_my_tag().

bool protocols::simple_filters::ResidueIEFilter::whole_pose_
private

Referenced by compute(), and parse_my_tag().


The documentation for this class was generated from the following files: