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Public Member Functions | List of all members
core::sequence::Aligner Class Referenceabstract

#include <Aligner.hh>

Inheritance diagram for core::sequence::Aligner:
Inheritance graph
Collaboration diagram for core::sequence::Aligner:
Collaboration graph

Public Member Functions

 Aligner ()
 ctor More...
virtual ~Aligner ()
 dtor More...
virtual SequenceAlignment align (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)=0
void validate_input (SequenceOP seq_y, SequenceOP seq_x, ScoringSchemeOP ss)
SequenceAlignment traceback (SequenceOP seq_x, SequenceOP seq_y, DP_Matrix matrix, CellOP start)

Constructor & Destructor Documentation

core::sequence::Aligner::Aligner ( )


virtual core::sequence::Aligner::~Aligner ( )


Member Function Documentation

virtual SequenceAlignment core::sequence::Aligner::align ( SequenceOP  seq_y,
SequenceOP  seq_x,
ScoringSchemeOP  ss 
pure virtual
SequenceAlignment core::sequence::Aligner::traceback ( SequenceOP  seq_x,
SequenceOP  seq_y,
DP_Matrix  matrix,
CellOP  start 
void core::sequence::Aligner::validate_input ( SequenceOP  seq_y,
SequenceOP  seq_x,
ScoringSchemeOP  ss 

The documentation for this class was generated from the following files: