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MinimizeBackbone.cc File Reference
#include <protocols/ligand_docking/MinimizeBackbone.hh>
#include <protocols/ligand_docking/MinimizeBackboneCreator.hh>
#include <protocols/ligand_docking/InterfaceBuilder.hh>
#include <protocols/ligand_docking/ligand_options/Interface.hh>
#include <protocols/loops/Loop.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/constraints/HarmonicFunc.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/VariantType.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Edge.hh>
#include <numeric/random/random.hh>
#include <utility/exit.hh>
#include <basic/Tracer.hh>
#include <core/types.hh>
#include <utility/tag/Tag.hh>
#include <protocols/moves/DataMap.hh>
#include <algorithm>
#include <core/pose/util.hh>
#include <protocols/ligand_docking/LigandArea.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <core/kinematics/tree/Atom.hh>
#include <utility/excn/Exceptions.hh>
#include <boost/foreach.hpp>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::ligand_docking
 

Constant Groups

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::ligand_docking
 

Macros

#define foreach   BOOST_FOREACH
 

Functions

static basic::Tracer protocols::ligand_docking::minimize_backbone_tracer ("protocols.ligand_docking.ligand_options.MinimizeBackbone", basic::t_debug)
 
void protocols::ligand_docking::reorder_with_first_non_mobile_as_root (core::kinematics::FoldTreeOP f, ligand_options::Interface const &interface, core::pose::Pose &pose)
 
core::Size protocols::ligand_docking::find_peptide_attach_pt (int const &start, int const &stop, std::map< core::Size, core::Size > const jump_to_attach)
 
core::Size protocols::ligand_docking::find_attach_pt (core::Size const jump_id, ligand_options::Interface const interface, core::pose::Pose const &pose)
 
void protocols::ligand_docking::restrict_to_protein_residues (ligand_options::Interface &interface, core::pose::Pose const &pose)
 

Macro Definition Documentation

#define foreach   BOOST_FOREACH