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protocols::swa::rna::StepWiseRNA_PoseSetup Member List

This is the complete list of members for protocols::swa::rna::StepWiseRNA_PoseSetup, including all inherited members.

add_aa_virt_rsd_as_root(core::pose::Pose &pose)protocols::swa::rna::StepWiseRNA_PoseSetupprivate
add_protonated_H1_adenosine_variants(core::pose::Pose &pose) const protocols::swa::rna::StepWiseRNA_PoseSetupprivate
add_terminal_res_repulsion(core::pose::Pose &pose) const protocols::swa::rna::StepWiseRNA_PoseSetupprivate
align_to_native_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
apply(core::pose::Pose &pose)protocols::swa::rna::StepWiseRNA_PoseSetupvirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
apply_bulge_variants(core::pose::Pose &pose) const protocols::swa::rna::StepWiseRNA_PoseSetupprivate
apply_cutpoint_variants(core::pose::Pose &pose, core::pose::Pose &pose_without_cutpoints)protocols::swa::rna::StepWiseRNA_PoseSetupprivate
apply_virtual_phosphate_variants(core::pose::Pose &pose) const protocols::swa::rna::StepWiseRNA_PoseSetupprivate
apply_virtual_res_variant(core::pose::Pose &pose) const protocols::swa::rna::StepWiseRNA_PoseSetupprivate
apply_virtual_res_variant_at_dinucleotide_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
bulge_res_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
copy_DOF_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
correctly_copy_HO2star_positions(core::pose::Pose &full_pose, utility::vector1< core::pose::Pose > const &start_pose_list)protocols::swa::rna::StepWiseRNA_PoseSetupprivate
create()protocols::moves::Movervirtual
Filters_map typedefprotocols::moves::Mover
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::swa::rna::StepWiseRNA_PoseSetupvirtual
get_native_pose() const protocols::moves::Mover
get_nearest_dist_to_O2star(core::Size const O2star_seq_num, core::pose::Pose const &input_pose, utility::vector1< core::Size > const input_res_list, utility::vector1< core::Size > const &common_res_list)protocols::swa::rna::StepWiseRNA_PoseSetupprivate
get_type() const protocols::moves::Moverinline
Import_pose(Size const &i, core::pose::Pose &import_pose) const protocols::swa::rna::StepWiseRNA_PoseSetupprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
input_tags_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
job_parameters_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
make_pose(core::pose::Pose &pose)protocols::swa::rna::StepWiseRNA_PoseSetupprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
native_virtual_res_list_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
operator=(Mover const &other)protocols::moves::Mover
output_pdb_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
read_input_pose_and_copy_dofs(core::pose::Pose &pose)protocols::swa::rna::StepWiseRNA_PoseSetupprivate
rebuild_bulge_mode_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
rsd_set_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
save_state(SerializableState &state)protocols::moves::Movervirtual
set_align_to_native(bool const setting)protocols::swa::rna::StepWiseRNA_PoseSetupinline
set_apply_virtual_res_variant_at_dinucleotide(bool const setting)protocols::swa::rna::StepWiseRNA_PoseSetupinline
set_bulge_res(utility::vector1< core::Size > const &bulge_res)protocols::swa::rna::StepWiseRNA_PoseSetupinline
set_copy_DOF(bool const setting)protocols::swa::rna::StepWiseRNA_PoseSetupinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_input_tags(utility::vector1< std::string > const &setting)protocols::swa::rna::StepWiseRNA_PoseSetupinline
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_native_virtual_res(utility::vector1< core::Size > const &native_virtual_res_list)protocols::swa::rna::StepWiseRNA_PoseSetupinline
set_output_pdb(bool const setting)protocols::swa::rna::StepWiseRNA_PoseSetupinline
set_rebuild_bulge_mode(bool const setting)protocols::swa::rna::StepWiseRNA_PoseSetupinline
set_silent_files_in(utility::vector1< std::string > const &setting)protocols::swa::rna::StepWiseRNA_PoseSetupinline
set_verbose(bool const setting)protocols::swa::rna::StepWiseRNA_PoseSetupinline
set_virtual_res(utility::vector1< core::Size > const &virtual_res_list)protocols::swa::rna::StepWiseRNA_PoseSetupinline
setup_native_pose(core::pose::Pose &pose)protocols::swa::rna::StepWiseRNA_PoseSetup
silent_files_in_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
StepWiseRNA_PoseSetup(StepWiseRNA_JobParametersOP &job_parameters)protocols::swa::rna::StepWiseRNA_PoseSetup
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
verbose_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
verify_protonated_H1_adenosine_variants(core::pose::Pose &pose) const protocols::swa::rna::StepWiseRNA_PoseSetupprivate
virtual_res_list_protocols::swa::rna::StepWiseRNA_PoseSetupprivate
~Mover()protocols::moves::Movervirtual
~StepWiseRNA_PoseSetup()protocols::swa::rna::StepWiseRNA_PoseSetup