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Public Member Functions | Private Member Functions | Private Attributes | List of all members
protocols::frag_picker::CSTalosIO Class Reference

#include <CSTalosIO.hh>

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Public Member Functions

 CSTalosIO ()
 
 CSTalosIO (std::string file_name)
 
utility::vector1
< utility::vector1< std::pair
< Size, Real > > > 
repack_to_matrix ()
 
Size get_first_residue_id () const
 
Size get_last_residue_id () const
 
std::string get_sequence () const
 
bool has_entry (Size residue_id)
 
void get_tuples (Size, utility::vector1< boost::tuple< Size, char, std::string, Real > >)
 
void get_tuples (Size, utility::vector1< boost::tuple< Size, char, std::string, Real > > &) const
 
utility::vector1< boost::tuple
< Size, char, std::string,
Real > > 
get_entries ()
 
void write (std::ostream &)
 
void read (std::string const &)
 
Real get_shift (Size, std::string const &) const
 
bool has_atom (Size, std::string const &) const
 

Private Member Functions

void print_sequence (std::string const &, std::ostream &) const
 
void set_up_atom_order ()
 

Private Attributes

std::string data_format_
 
std::string sequence_
 
utility::vector1< std::string > column_names_
 
Size first_residue_index_
 
utility::vector1< boost::tuple
< Size, char, std::string,
Real > > 
entries_
 
std::multimap< Size, Sizeresids_to_entries_map_
 
std::map< std::string, Sizeorder_of_atoms_
 
utility::vector1< boost::tuple
< Size, char, std::string,
Real > > 
used_for_searching_
 

Constructor & Destructor Documentation

protocols::frag_picker::CSTalosIO::CSTalosIO ( )
inline
protocols::frag_picker::CSTalosIO::CSTalosIO ( std::string  file_name)
inline

Member Function Documentation

utility::vector1<boost::tuple<Size, char, std::string, Real> > protocols::frag_picker::CSTalosIO::get_entries ( )
inline
Size protocols::frag_picker::CSTalosIO::get_first_residue_id ( ) const
inline
Size protocols::frag_picker::CSTalosIO::get_last_residue_id ( ) const
inline
std::string protocols::frag_picker::CSTalosIO::get_sequence ( ) const
inline
Real protocols::frag_picker::CSTalosIO::get_shift ( Size  residue_id,
std::string const &  atom_name 
) const
void protocols::frag_picker::CSTalosIO::get_tuples ( Size  residue_id,
utility::vector1< boost::tuple< Size, char, std::string, Real > >  results 
)

References entries_, and resids_to_entries_map_.

Referenced by get_shift(), and has_atom().

void protocols::frag_picker::CSTalosIO::get_tuples ( Size  residue_id,
utility::vector1< boost::tuple< Size, char, std::string, Real > > &  results 
) const

References entries_, and resids_to_entries_map_.

bool protocols::frag_picker::CSTalosIO::has_atom ( Size  residue_id,
std::string const &  atom_name 
) const
bool protocols::frag_picker::CSTalosIO::has_entry ( Size  residue_id)
inline
void protocols::frag_picker::CSTalosIO::print_sequence ( std::string const &  ,
std::ostream &   
) const
private
void protocols::frag_picker::CSTalosIO::read ( std::string const &  file_name)
utility::vector1< utility::vector1< std::pair< Size, Real > > > protocols::frag_picker::CSTalosIO::repack_to_matrix ( )
void protocols::frag_picker::CSTalosIO::set_up_atom_order ( )
private

References order_of_atoms_.

void protocols::frag_picker::CSTalosIO::write ( std::ostream &  out)

Member Data Documentation

utility::vector1<std::string> protocols::frag_picker::CSTalosIO::column_names_
private

Referenced by read(), and write().

std::string protocols::frag_picker::CSTalosIO::data_format_
private

Referenced by read(), and write().

utility::vector1<boost::tuple<Size, char, std::string, Real> > protocols::frag_picker::CSTalosIO::entries_
private
Size protocols::frag_picker::CSTalosIO::first_residue_index_
private

Referenced by read(), and write().

std::map<std::string, Size> protocols::frag_picker::CSTalosIO::order_of_atoms_
private
std::multimap<Size, Size> protocols::frag_picker::CSTalosIO::resids_to_entries_map_
private

Referenced by get_shift(), get_tuples(), has_atom(), and read().

std::string protocols::frag_picker::CSTalosIO::sequence_
private

Referenced by read(), and write().

utility::vector1<boost::tuple<Size, char, std::string, Real> > protocols::frag_picker::CSTalosIO::used_for_searching_
private

Referenced by get_shift(), and has_atom().


The documentation for this class was generated from the following files: