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protocols::hybridization::FoldTreeHybridize Class Reference

#include <FoldTreeHybridize.hh>

Inheritance diagram for protocols::hybridization::FoldTreeHybridize:
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Public Member Functions

 FoldTreeHybridize ()
 
 FoldTreeHybridize (core::Size const initial_template_index, utility::vector1< core::pose::PoseOP > const &template_poses, utility::vector1< core::Real > const &template_weights, utility::vector1< protocols::loops::Loops > const &template_chunks, utility::vector1< protocols::loops::Loops > const &template_contigs, core::fragment::FragSetOP fragments_small_in, core::fragment::FragSetOP fragments_big_in)
 
void init ()
 
void revert_loops_to_original (core::pose::Pose &pose, Loops loops)
 
void set_loops_to_virt_ala (core::pose::Pose &pose, Loops loops)
 
Real gap_distance (Size Seq_gap)
 
void add_gap_constraints_to_pose (core::pose::Pose &pose, Loops const &chunks, int gap_edge_shift=0, Real stdev=0.1)
 
void restore_original_foldtree (core::pose::Pose &pose)
 
void setup_foldtree (core::pose::Pose &pose)
 
numeric::xyzVector< Realcenter_of_mass (core::pose::Pose const &pose)
 
void translate_virt_to_CoM (core::pose::Pose &pose)
 
utility::vector1< core::Realget_residue_weights_for_1mers (core::pose::Pose &pose)
 
utility::vector1< core::Realget_residue_weights_for_small_frags (core::pose::Pose &pose)
 
utility::vector1< core::Realget_residue_weights_for_big_frags (core::pose::Pose &pose)
 
void set_constraint_file (std::string cst_file_in)
 
void set_increase_cycles (core::Real increase_cycles_in)
 
void set_stage1_1_cycles (core::Size stage1_1_cycles_in)
 
void set_stage1_2_cycles (core::Size stage1_2_cycles_in)
 
void set_stage1_3_cycles (core::Size stage1_3_cycles_in)
 
void set_stage1_4_cycles (core::Size stage1_4_cycles_in)
 
void set_add_non_init_chunks (bool add_non_init_chunks_in)
 
void set_domain_assembly (bool domain_assembly_in)
 
void set_add_hetatm (bool add_hetatm_in, core::Real hetatm_cst_weight_in)
 
void set_frag_1mer_insertion_weight (core::Real frag_1mer_insertion_weight_in)
 
void set_small_frag_insertion_weight (core::Real small_frag_insertion_weight_in)
 
void set_big_frag_insertion_weight (core::Real big_frag_insertion_weight_in)
 
void set_frag_weight_aligned (core::Real frag_weight_aligned_in)
 
void set_auto_frag_insertion_weight (bool auto_frag_insertion_weight_in)
 
void set_max_registry_shift (core::Size max_registry_shift_in)
 
void set_top_n_big_frag (core::Size top_n_big_frag_in)
 
void set_top_n_small_frag (core::Size top_n_small_frag_in)
 
void set_pairings_file (std::string pairings_file_in)
 
void set_sheets (utility::vector1< core::Size > sheets_in)
 
void set_random_sheets (utility::vector1< core::Size > random_sheets_in)
 
void set_filter_templates (bool filter_templates_in)
 
void set_scorefunction (core::scoring::ScoreFunctionOP const scorefxn)
 
void setup_scorefunctions (core::scoring::ScoreFunctionOP score0, core::scoring::ScoreFunctionOP score1, core::scoring::ScoreFunctionOP score2, core::scoring::ScoreFunctionOP score5, core::scoring::ScoreFunctionOP score3)
 
void apply (core::pose::Pose &pose)
 
std::string get_name () const
 Each derived class must specify its name. The class name. More...
 
utility::vector1< std::pair
< core::Size, core::Size > > 
get_strand_pairs ()
 
std::set< core::Sizeget_pairings_residues ()
 
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
 
virtual ~Mover ()
 
virtual MoverSP create ()
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void parse_state (SerializableState const &state)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)
 
virtual void save_state (SerializableState &state)
 
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 
 Mover (Mover const &other)
 
Moveroperator= (Mover const &other)
 assignment operator More...
 
virtual core::Real last_proposal_density_ratio ()
 
std::string const & type () const
 
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
 
void set_current_tag (std::string const &new_tag)
 
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
 
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
 
PoseCOP get_input_pose () const
 
PoseCOP get_native_pose () const
 
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
 
void type (const std::string &type_in)
 
virtual MoverOP clone () const
 clone has to be overridden only if clone invocation is expected. More...
 
virtual void parse_my_tag (TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
 
std::string get_type () const
 
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
 
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
 
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
 
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
 
virtual Stringsinfo ()
 non-const accessor More...
 
virtual Strings const & info () const
 const accessor More...
 
virtual bool reinitialize_for_each_job () const
 this function informs the job distributor (august 08 vintage) whether this object needs to be freshly regenerated on each use. More...
 
virtual bool reinitialize_for_new_input () const
 this function informs the job distributor (august 08 vintage) whether this object needs to be regenerated when the input pose is about to change (for example, if the mover has special code on the first apply() that is only valid for that one input pose). More...
 
virtual MoverOP fresh_instance () const
 this is like clone(), except it generates a new mover object freshly created with the default ctor. This function should be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage). More...
 
void set_current_job (protocols::jobdist::BasicJobCOP job)
 
jobdist::BasicJobCOP get_current_job () const
 

Private Member Functions

void normalize_template_wts ()
 
void auto_frag_insertion_weight (WeightedFragmentTrialMoverOP &frag_1mer_trial_mover, WeightedFragmentTrialMoverOP &small_frag_trial_mover, WeightedFragmentTrialMoverOP &big_frag_trial_mover)
 
utility::vector1< core::Sizeget_jump_anchors ()
 
void add_strand_pairings ()
 
void add_strand_pairing (core::scoring::dssp::Pairing const &pairing)
 
void filter_templates (std::set< core::Size > const &templates_to_remove)
 
void superimpose_strand_pairings_to_templates (core::pose::Pose &pose)
 
core::Size map_pdb_info_number (const core::pose::Pose &pose, core::Size pdb_res)
 
protocols::simple_moves::ClassicFragmentMoverOP get_pairings_jump_mover ()
 

Private Attributes

core::Real increase_cycles_
 
core::Size stage1_1_cycles_
 
core::Size stage1_2_cycles_
 
core::Size stage1_3_cycles_
 
core::Size stage1_4_cycles_
 
core::Real frag_1mer_insertion_weight_
 
core::Real small_frag_insertion_weight_
 
core::Real big_frag_insertion_weight_
 
bool add_non_init_chunks_
 
bool domain_assembly_
 
bool add_hetatm_
 
core::Real hetatm_cst_weight_
 
core::Real frag_weight_aligned_
 
bool auto_frag_insertion_weight_
 
core::Size max_registry_shift_
 
std::string cst_file_
 
core::Size initial_template_index_
 
core::scoring::ScoreFunctionOP scorefxn_
 
utility::vector1< core::Realtemplate_wts_
 
utility::vector1
< core::pose::PoseOP
template_poses_
 
utility::vector1
< protocols::loops::Loops
template_chunks_
 
utility::vector1
< protocols::loops::Loops
template_contigs_
 
utility::vector1
< core::fragment::FragSetOP
frag_libs_1mer_
 
utility::vector1
< core::fragment::FragSetOP
frag_libs_small_
 
utility::vector1
< core::fragment::FragSetOP
frag_libs_big_
 
Loops ss_chunks_pose_
 
core::Size top_n_big_frag_
 
core::Size top_n_small_frag_
 
std::string pairings_file_
 
utility::vector1< core::Sizesheets_
 
utility::vector1< core::Sizerandom_sheets_
 
bool filter_templates_
 
std::string target_sequence_
 
utility::vector1< std::pair
< core::Size, core::Size > > 
strand_pairs_
 
std::set< core::Sizestrand_pairings_template_indices_
 
std::set< core::Sizetemplates_with_incorrect_strand_pairings_
 
protocols::jumping::JumpSample jump_sample_
 
core::fragment::FragSetOP jump_frags_
 
std::set< core::Sizefloating_pairs_
 
bool overlap_chainbreaks_
 
HybridizeFoldtreeDynamic foldtree_mover_
 
core::pose::PoseOP native_
 

Additional Inherited Members

- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagPtr TagPtr
 
typedef core::pose::Pose Pose
 
typedef core::pose::PoseCOP PoseCOP
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef std::list< std::string > Strings
 
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
 
static void register_options ()
 overload this static method if you access options within the mover. these options will end up in -help of your application if users of this mover call register_options. do this recursively! if you use movers within your mover, call their register_options in your register_options() method. More...
 
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...
 

Constructor & Destructor Documentation

protocols::hybridization::FoldTreeHybridize::FoldTreeHybridize ( )

References init().

protocols::hybridization::FoldTreeHybridize::FoldTreeHybridize ( core::Size const  initial_template_index,
utility::vector1< core::pose::PoseOP > const &  template_poses,
utility::vector1< core::Real > const &  template_weights,
utility::vector1< protocols::loops::Loops > const &  template_chunks,
utility::vector1< protocols::loops::Loops > const &  template_contigs,
core::fragment::FragSetOP  fragments_small_in,
core::fragment::FragSetOP  fragments_big_in 
)

Member Function Documentation

void protocols::hybridization::FoldTreeHybridize::add_gap_constraints_to_pose ( core::pose::Pose pose,
Loops const &  chunks,
int  gap_edge_shift = 0,
Real  stdev = 0.1 
)
void protocols::hybridization::FoldTreeHybridize::add_strand_pairing ( core::scoring::dssp::Pairing const &  pairing)
private
void protocols::hybridization::FoldTreeHybridize::add_strand_pairings ( )
private
void protocols::hybridization::FoldTreeHybridize::apply ( core::pose::Pose pose)
virtual

Implements protocols::moves::Mover.

References protocols::moves::accept_reject, add_hetatm_, protocols::hybridization::add_non_protein_cst(), add_strand_pairings(), protocols::hybridization::all_chunks, protocols::moves::WhileMover::apply(), protocols::moves::RepeatMover::apply(), protocols::hybridization::ChunkTrialMover::apply(), auto_frag_insertion_weight(), big_frag_insertion_weight_, cst_file_, floating_pairs_, frag_1mer_insertion_weight_, frag_libs_1mer_, frag_libs_big_, frag_libs_small_, protocols::hybridization::get_gdtmm(), get_jump_anchors(), get_pairings_jump_mover(), get_pairings_residues(), get_residue_weights_for_1mers(), get_residue_weights_for_big_frags(), get_residue_weights_for_small_frags(), core::conformation::Residue::has(), hetatm_cst_weight_, increase_cycles_, initial_template_index_, core::conformation::Residue::is_protein(), core::scoring::linear_chainbreak, max_registry_shift_, core::scoring::name_from_score_type(), native_, core::scoring::overlap_chainbreak, overlap_chainbreaks_, protocols::hybridization::random_chunk, core::pose::Pose::remove_constraints(), core::pose::Pose::residue(), restore_original_foldtree(), scorefxn_, core::pose::Pose::sequence(), protocols::hybridization::ChunkTrialMover::set_template(), core::pose::setPoseExtraScores(), protocols::hybridization::setup_centroid_constraints(), setup_foldtree(), setup_scorefunctions(), protocols::hybridization::AllResiduesChanged::show_unmoved(), small_frag_insertion_weight_, ss_chunks_pose_, stage1_1_cycles_, stage1_2_cycles_, stage1_3_cycles_, stage1_4_cycles_, strand_pairings_template_indices_, superimpose_strand_pairings_to_templates(), target_sequence_, template_chunks_, template_poses_, template_wts_, top_n_big_frag_, core::pose::Pose::total_residue(), protocols::hybridization::TR(), and translate_virt_to_CoM().

void protocols::hybridization::FoldTreeHybridize::auto_frag_insertion_weight ( WeightedFragmentTrialMoverOP frag_1mer_trial_mover,
WeightedFragmentTrialMoverOP small_frag_trial_mover,
WeightedFragmentTrialMoverOP big_frag_trial_mover 
)
private
numeric::xyzVector< Real > protocols::hybridization::FoldTreeHybridize::center_of_mass ( core::pose::Pose const &  pose)
void protocols::hybridization::FoldTreeHybridize::filter_templates ( std::set< core::Size > const &  templates_to_remove)
private
Real protocols::hybridization::FoldTreeHybridize::gap_distance ( Size  Seq_gap)
utility::vector1< core::Size > protocols::hybridization::FoldTreeHybridize::get_jump_anchors ( )
private
std::string protocols::hybridization::FoldTreeHybridize::get_name ( ) const
virtual

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

protocols::simple_moves::ClassicFragmentMoverOP protocols::hybridization::FoldTreeHybridize::get_pairings_jump_mover ( )
private

References jump_frags_.

Referenced by add_strand_pairing(), and apply().

std::set< core::Size > protocols::hybridization::FoldTreeHybridize::get_pairings_residues ( )

References strand_pairs_.

Referenced by apply(), and get_jump_anchors().

utility::vector1< core::Real > protocols::hybridization::FoldTreeHybridize::get_residue_weights_for_1mers ( core::pose::Pose pose)
utility::vector1< core::Real > protocols::hybridization::FoldTreeHybridize::get_residue_weights_for_big_frags ( core::pose::Pose pose)
utility::vector1< core::Real > protocols::hybridization::FoldTreeHybridize::get_residue_weights_for_small_frags ( core::pose::Pose pose)
utility::vector1< std::pair< core::Size, core::Size > > protocols::hybridization::FoldTreeHybridize::get_strand_pairs ( )
inline
void protocols::hybridization::FoldTreeHybridize::init ( void  )
core::Size protocols::hybridization::FoldTreeHybridize::map_pdb_info_number ( const core::pose::Pose pose,
core::Size  pdb_res 
)
private
void protocols::hybridization::FoldTreeHybridize::normalize_template_wts ( )
private
void protocols::hybridization::FoldTreeHybridize::restore_original_foldtree ( core::pose::Pose pose)
void protocols::hybridization::FoldTreeHybridize::revert_loops_to_original ( core::pose::Pose pose,
Loops  loops 
)
void protocols::hybridization::FoldTreeHybridize::set_add_hetatm ( bool  add_hetatm_in,
core::Real  hetatm_cst_weight_in 
)
inline
void protocols::hybridization::FoldTreeHybridize::set_add_non_init_chunks ( bool  add_non_init_chunks_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_auto_frag_insertion_weight ( bool  auto_frag_insertion_weight_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_big_frag_insertion_weight ( core::Real  big_frag_insertion_weight_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_constraint_file ( std::string  cst_file_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_domain_assembly ( bool  domain_assembly_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_filter_templates ( bool  filter_templates_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_frag_1mer_insertion_weight ( core::Real  frag_1mer_insertion_weight_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_frag_weight_aligned ( core::Real  frag_weight_aligned_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_increase_cycles ( core::Real  increase_cycles_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_loops_to_virt_ala ( core::pose::Pose pose,
Loops  loops 
)
void protocols::hybridization::FoldTreeHybridize::set_max_registry_shift ( core::Size  max_registry_shift_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_pairings_file ( std::string  pairings_file_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_random_sheets ( utility::vector1< core::Size random_sheets_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_scorefunction ( core::scoring::ScoreFunctionOP const  scorefxn)
inline

Referenced by init().

void protocols::hybridization::FoldTreeHybridize::set_sheets ( utility::vector1< core::Size sheets_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_small_frag_insertion_weight ( core::Real  small_frag_insertion_weight_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_stage1_1_cycles ( core::Size  stage1_1_cycles_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_stage1_2_cycles ( core::Size  stage1_2_cycles_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_stage1_3_cycles ( core::Size  stage1_3_cycles_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_stage1_4_cycles ( core::Size  stage1_4_cycles_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_top_n_big_frag ( core::Size  top_n_big_frag_in)
inline
void protocols::hybridization::FoldTreeHybridize::set_top_n_small_frag ( core::Size  top_n_small_frag_in)
inline
void protocols::hybridization::FoldTreeHybridize::setup_foldtree ( core::pose::Pose pose)
void protocols::hybridization::FoldTreeHybridize::setup_scorefunctions ( core::scoring::ScoreFunctionOP  score0,
core::scoring::ScoreFunctionOP  score1,
core::scoring::ScoreFunctionOP  score2,
core::scoring::ScoreFunctionOP  score5,
core::scoring::ScoreFunctionOP  score3 
)
void protocols::hybridization::FoldTreeHybridize::superimpose_strand_pairings_to_templates ( core::pose::Pose pose)
private
void protocols::hybridization::FoldTreeHybridize::translate_virt_to_CoM ( core::pose::Pose pose)

Member Data Documentation

bool protocols::hybridization::FoldTreeHybridize::add_hetatm_
private

Referenced by apply(), and init().

bool protocols::hybridization::FoldTreeHybridize::add_non_init_chunks_
private

Referenced by init(), and setup_foldtree().

bool protocols::hybridization::FoldTreeHybridize::auto_frag_insertion_weight_
private

Referenced by auto_frag_insertion_weight(), and init().

core::Real protocols::hybridization::FoldTreeHybridize::big_frag_insertion_weight_
private
std::string protocols::hybridization::FoldTreeHybridize::cst_file_
private

Referenced by apply().

bool protocols::hybridization::FoldTreeHybridize::domain_assembly_
private
bool protocols::hybridization::FoldTreeHybridize::filter_templates_
private

Referenced by add_strand_pairings(), and init().

std::set< core::Size > protocols::hybridization::FoldTreeHybridize::floating_pairs_
private
HybridizeFoldtreeDynamic protocols::hybridization::FoldTreeHybridize::foldtree_mover_
private
core::Real protocols::hybridization::FoldTreeHybridize::frag_1mer_insertion_weight_
private
utility::vector1< core::fragment::FragSetOP > protocols::hybridization::FoldTreeHybridize::frag_libs_1mer_
private

Referenced by apply(), and FoldTreeHybridize().

utility::vector1< core::fragment::FragSetOP > protocols::hybridization::FoldTreeHybridize::frag_libs_big_
private
utility::vector1< core::fragment::FragSetOP > protocols::hybridization::FoldTreeHybridize::frag_libs_small_
private
core::Real protocols::hybridization::FoldTreeHybridize::frag_weight_aligned_
private
core::Real protocols::hybridization::FoldTreeHybridize::hetatm_cst_weight_
private

Referenced by apply(), and init().

core::Real protocols::hybridization::FoldTreeHybridize::increase_cycles_
private

Referenced by apply(), and init().

core::Size protocols::hybridization::FoldTreeHybridize::initial_template_index_
private
core::fragment::FragSetOP protocols::hybridization::FoldTreeHybridize::jump_frags_
private
protocols::jumping::JumpSample protocols::hybridization::FoldTreeHybridize::jump_sample_
private
core::Size protocols::hybridization::FoldTreeHybridize::max_registry_shift_
private

Referenced by apply(), and init().

core::pose::PoseOP protocols::hybridization::FoldTreeHybridize::native_
private

Referenced by apply(), and init().

bool protocols::hybridization::FoldTreeHybridize::overlap_chainbreaks_
private

Referenced by apply(), and init().

std::string protocols::hybridization::FoldTreeHybridize::pairings_file_
private

Referenced by add_strand_pairings(), and init().

utility::vector1< core::Size > protocols::hybridization::FoldTreeHybridize::random_sheets_
private

Referenced by add_strand_pairings(), and init().

core::scoring::ScoreFunctionOP protocols::hybridization::FoldTreeHybridize::scorefxn_
private

Referenced by apply(), and setup_scorefunctions().

utility::vector1< core::Size > protocols::hybridization::FoldTreeHybridize::sheets_
private

Referenced by add_strand_pairings(), and init().

core::Real protocols::hybridization::FoldTreeHybridize::small_frag_insertion_weight_
private
Loops protocols::hybridization::FoldTreeHybridize::ss_chunks_pose_
private

Referenced by apply().

core::Size protocols::hybridization::FoldTreeHybridize::stage1_1_cycles_
private

Referenced by apply(), and init().

core::Size protocols::hybridization::FoldTreeHybridize::stage1_2_cycles_
private

Referenced by apply(), and init().

core::Size protocols::hybridization::FoldTreeHybridize::stage1_3_cycles_
private

Referenced by apply(), and init().

core::Size protocols::hybridization::FoldTreeHybridize::stage1_4_cycles_
private

Referenced by apply(), and init().

std::set< core::Size > protocols::hybridization::FoldTreeHybridize::strand_pairings_template_indices_
private
utility::vector1< std::pair< core::Size, core::Size > > protocols::hybridization::FoldTreeHybridize::strand_pairs_
private
std::string protocols::hybridization::FoldTreeHybridize::target_sequence_
private

Referenced by add_strand_pairing(), and apply().

utility::vector1< protocols::loops::Loops > protocols::hybridization::FoldTreeHybridize::template_chunks_
private
utility::vector1< protocols::loops::Loops > protocols::hybridization::FoldTreeHybridize::template_contigs_
private
utility::vector1< core::pose::PoseOP > protocols::hybridization::FoldTreeHybridize::template_poses_
private
utility::vector1< core::Real > protocols::hybridization::FoldTreeHybridize::template_wts_
private
std::set< core::Size > protocols::hybridization::FoldTreeHybridize::templates_with_incorrect_strand_pairings_
private
core::Size protocols::hybridization::FoldTreeHybridize::top_n_big_frag_
private
core::Size protocols::hybridization::FoldTreeHybridize::top_n_small_frag_
private

Referenced by auto_frag_insertion_weight(), and init().


The documentation for this class was generated from the following files: