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protocols::simple_filters::Operator Class Reference

simply take a list of filters and combine them using the operation above More...

#include <OperatorFilter.hh>

Inheritance diagram for protocols::simple_filters::Operator:
Inheritance graph
Collaboration diagram for protocols::simple_filters::Operator:
Collaboration graph

Public Member Functions

 Operator ()
virtual ~Operator ()
filters::FilterOP clone () const
filters::FilterOP fresh_instance () const
virtual bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
void parse_my_tag (utility::tag::TagPtr const tag, moves::DataMap &, filters::Filters_map const &filters, moves::Movers_map const &, core::pose::Pose const &)
core::Real compute (core::pose::Pose const &pose) const
< protocols::filters::FilterOP
filters () const
void add_filter (protocols::filters::FilterOP f)
void reset_baseline (core::pose::Pose const &pose, bool const attempt_read_from_checkpoint)
core::Real threshold () const
 goes over Sigmoid filters and resets them. Note that this is nonconst, and cannot be called from apply More...
void threshold (core::Real const t)
Operation operation () const
void operation (Operation const o)
void negate (bool const b)
bool negate () const
utility::vector1< std::string > relative_pose_names ()
void relative_pose_names (utility::vector1< std::string > const s)
bool multi_relative () const
void multi_relative (bool const m)
void modify_relative_filters_pdb_names ()
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 Filter (Filter const &)
virtual ~Filter ()
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void apply (core::io::serialization::PipeMap &pmap)
virtual void score (core::io::serialization::PipeMap &pmap)
virtual core::Real score (core::pose::Pose &pose)
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string name () const

Private Attributes

< protocols::filters::FilterOP
Operation operation_
core::Real threshold_
bool negate_
utility::vector1< std::string > relative_pose_names_
bool multi_relative_

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Detailed Description

simply take a list of filters and combine them using the operation above

Constructor & Destructor Documentation

protocols::simple_filters::Operator::Operator ( )

References filters_.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::Operator::~Operator ( )

Member Function Documentation

void protocols::simple_filters::Operator::add_filter ( protocols::filters::FilterOP  f)
bool protocols::simple_filters::Operator::apply ( core::pose::Pose const &  pose) const

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), negate(), and threshold().

filters::FilterOP protocols::simple_filters::Operator::clone ( ) const

Implements protocols::filters::Filter.

References Operator().

core::Real protocols::simple_filters::Operator::compute ( core::pose::Pose const &  pose) const
utility::vector1< protocols::filters::FilterOP > protocols::simple_filters::Operator::filters ( ) const

References filters_.

Referenced by compute(), and reset_baseline().

filters::FilterOP protocols::simple_filters::Operator::fresh_instance ( ) const

Implements protocols::filters::Filter.

References Operator().

void protocols::simple_filters::Operator::modify_relative_filters_pdb_names ( )

References add_filter(), filters_, and relative_pose_names_.

Referenced by parse_my_tag().

bool protocols::simple_filters::Operator::multi_relative ( ) const

References multi_relative_.

Referenced by parse_my_tag().

void protocols::simple_filters::Operator::multi_relative ( bool const  m)

References multi_relative_.

void protocols::simple_filters::Operator::negate ( bool const  b)
bool protocols::simple_filters::Operator::negate ( ) const

References negate_.

Referenced by apply(), compute(), and parse_my_tag().

Operation protocols::simple_filters::Operator::operation ( ) const

References operation_.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::Operator::operation ( Operation const  o)

References operation_.

void protocols::simple_filters::Operator::parse_my_tag ( utility::tag::TagPtr const  tag,
moves::DataMap ,
filters::Filters_map const &  filters,
moves::Movers_map const &  ,
core::pose::Pose const &   
utility::vector1< std::string > protocols::simple_filters::Operator::relative_pose_names ( )

References relative_pose_names_.

void protocols::simple_filters::Operator::relative_pose_names ( utility::vector1< std::string > const  s)

References relative_pose_names_.

void protocols::simple_filters::Operator::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::Operator::report_sm ( core::pose::Pose const &  ) const

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Referenced by compute().

void protocols::simple_filters::Operator::reset_baseline ( core::pose::Pose const &  pose,
bool const  attempt_read_from_checkpoint 

References filters().

core::Real protocols::simple_filters::Operator::threshold ( ) const

goes over Sigmoid filters and resets them. Note that this is nonconst, and cannot be called from apply

References threshold_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::Operator::threshold ( core::Real const  t)

Member Data Documentation

utility::vector1< protocols::filters::FilterOP > protocols::simple_filters::Operator::filters_
bool protocols::simple_filters::Operator::multi_relative_

Referenced by multi_relative().

bool protocols::simple_filters::Operator::negate_

Referenced by negate().

Operation protocols::simple_filters::Operator::operation_

Referenced by operation().

utility::vector1< std::string > protocols::simple_filters::Operator::relative_pose_names_
core::Real protocols::simple_filters::Operator::threshold_

Referenced by threshold().

The documentation for this class was generated from the following files: