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protocols::features::StructureScoresFeatures Class Reference

#include <StructureScoresFeatures.hh>

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Public Member Functions

 StructureScoresFeatures ()
 
 StructureScoresFeatures (core::scoring::ScoreFunctionOP scfxn)
 
 StructureScoresFeatures (StructureScoresFeatures const &src)
 
virtual ~StructureScoresFeatures ()
 
std::string type_name () const
 return string with class name More...
 
virtual void write_schema_to_db (utility::sql_database::sessionOP db_session) const
 generate the table schemas and write them to the database More...
 
utility::vector1< std::string > features_reporter_dependencies () const
 return the set of features reporters that are required to also already be extracted by the time this one is used. More...
 
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
void compute_energies (core::pose::Pose const &pose_in, utility::vector1< bool > const &relevant_residues, core::scoring::EnergyMap &emap) const
 
core::Size report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
 collect all the feature data for the pose More...
 
void delete_record (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
 
void insert_structure_score_rows (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session) const
 
- Public Member Functions inherited from protocols::features::FeaturesReporter
virtual ~FeaturesReporter ()
 Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
 
virtual std::string schema () const
 return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...
 
core::Size report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
 collect all the feature data for the pose. More...
 
virtual void load_into_pose (utility::sql_database::sessionOP, boost::uuids::uuid, core::pose::Pose &)
 

Private Attributes

core::scoring::ScoreFunctionOP scfxn_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string find_tag (core::pose::Pose const &pose) const
 
void delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
 a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...
 

Constructor & Destructor Documentation

protocols::features::StructureScoresFeatures::StructureScoresFeatures ( )
protocols::features::StructureScoresFeatures::StructureScoresFeatures ( core::scoring::ScoreFunctionOP  scfxn)
protocols::features::StructureScoresFeatures::StructureScoresFeatures ( StructureScoresFeatures const &  src)
protocols::features::StructureScoresFeatures::~StructureScoresFeatures ( )
virtual

Member Function Documentation

void protocols::features::StructureScoresFeatures::compute_energies ( core::pose::Pose const &  pose_in,
utility::vector1< bool > const &  relevant_residues,
core::scoring::EnergyMap emap 
) const
void protocols::features::StructureScoresFeatures::delete_record ( boost::uuids::uuid  struct_id,
utility::sql_database::sessionOP  db_session 
)
virtual
utility::vector1< std::string > protocols::features::StructureScoresFeatures::features_reporter_dependencies ( ) const
virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::StructureScoresFeatures::insert_structure_score_rows ( core::pose::Pose const &  pose,
utility::vector1< bool > const &  relevant_residues,
boost::uuids::uuid  struct_id,
utility::sql_database::sessionOP  db_session 
) const
void protocols::features::StructureScoresFeatures::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual
Size protocols::features::StructureScoresFeatures::report_features ( core::pose::Pose const &  pose,
utility::vector1< bool > const &  relevant_residues,
boost::uuids::uuid  struct_id,
utility::sql_database::sessionOP  db_session 
)
virtual

collect all the feature data for the pose

Implements protocols::features::FeaturesReporter.

References insert_structure_score_rows().

string protocols::features::StructureScoresFeatures::type_name ( ) const
virtual

return string with class name

Reimplemented from protocols::features::FeaturesReporter.

Referenced by parse_my_tag().

void protocols::features::StructureScoresFeatures::write_schema_to_db ( utility::sql_database::sessionOP  db_session) const
virtual

generate the table schemas and write them to the database

Implements protocols::features::FeaturesReporter.

Member Data Documentation

core::scoring::ScoreFunctionOP protocols::features::StructureScoresFeatures::scfxn_
private

The documentation for this class was generated from the following files: