AntibodyUtil.hh File Reference

#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/types.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <utility/vector1.hh>
#include <core/pack/task/TaskFactory.fwd.hh>
#include <protocols/antibody2/AntibodyInfo.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody2

Constant Groups
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody2

Functions
void	protocols::antibody2::simple_one_loop_fold_tree (pose::Pose &pose_in, loops::Loop const &loop)
void	protocols::antibody2::simple_fold_tree (pose::Pose &pose_in, Size jumppoint1, Size cutpoint, Size jumppoint2)
bool	protocols::antibody2::CDR_H3_filter_legacy_code_with_old_rule (const pose::Pose &pose_in, loops::Loop &input_loop, bool is_camelid)
	tests if a loop has H3 like base charachteristics More...
bool	protocols::antibody2::CDR_H3_cter_filter (const pose::Pose &pose_in, AntibodyInfoOP ab_info)
core::pack::task::TaskFactoryOP	protocols::antibody2::setup_packer_task (pose::Pose &pose_in)
bool	protocols::antibody2::cutpoints_separation (core::pose::Pose &pose, AntibodyInfoOP &antibody_info)
	return false if any cdr cutpoint is broken More...
Real	protocols::antibody2::cutpoint_separation (pose::Pose &pose_in, Size cutpoint)
Real	protocols::antibody2::global_loop_rmsd (const pose::Pose &pose_in, const pose::Pose &native_pose, loops::LoopsOP current_loop)
Real	protocols::antibody2::vl_vh_packing_angle (const pose::Pose &pose_in, AntibodyInfoOP ab_info)
void	protocols::antibody2::align_to_native (core::pose::Pose &pose, core::pose::Pose &native_pose, AntibodyInfoOP ab_info, AntibodyInfoOP native_ab_info)
	align current Fv to native.Fv More...

Detailed Description

Author

Jianqing Xu (xubes.nosp@m.t@gm.nosp@m.ail.c.nosp@m.om)