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protocols::jd2::archive::ArchiveBase Member List

This is the complete list of members for protocols::jd2::archive::ArchiveBase, including all inherited members.

AbstractArchiveBase(ArchiveManagerAP ptr)protocols::jd2::archive::AbstractArchiveBaseinline
AbstractArchiveBase()protocols::jd2::archive::AbstractArchiveBaseinline
acceptance_history_protocols::jd2::archive::ArchiveBaseprivate
AcceptHistoryQueue typedefprotocols::jd2::archive::ArchiveBaseprivate
accepts_since_last_batch()protocols::jd2::archive::ArchiveBaseinline
accepts_since_last_batch() const protocols::jd2::archive::ArchiveBaseinline
accepts_since_last_batch_protocols::jd2::archive::ArchiveBaseprivate
add_structure(core::io::silent::SilentStructOP orig_from_batch, Batch const &)protocols::jd2::archive::ArchiveBasevirtual
add_structure_at_position(SilentStructs::iterator iss, core::io::silent::SilentStructOP new_decoy)protocols::jd2::archive::ArchiveBaseprotected
ArchiveBase(ArchiveManagerAP ptr=NULL)protocols::jd2::archive::ArchiveBase
const_decoy_iterator typedefprotocols::jd2::archive::ArchiveBaseprotected
count_removed_structures(core::Size n_removed)protocols::jd2::archive::ArchiveBaseprotected
count_structure(Batch const &batch, bool accepted)protocols::jd2::archive::ArchiveBaseprotectedvirtual
current_acceptance_ratio() const protocols::jd2::archive::ArchiveBaseinline
decoy_iterator typedefprotocols::jd2::archive::ArchiveBaseprotected
decoys() const protocols::jd2::archive::ArchiveBaseinline
decoys()protocols::jd2::archive::ArchiveBaseinline
decoys_protocols::jd2::archive::ArchiveBaseprivate
finished() const protocols::jd2::archive::ArchiveBaseinlinevirtual
floating_acceptance_ratio_protocols::jd2::archive::ArchiveBaseprivate
generate_batch()=0protocols::jd2::archive::ArchiveBasepure virtual
idle()protocols::jd2::archive::ArchiveBaseinlinevirtual
init_from_decoy_set(core::io::silent::SilentFileData const &sfd)protocols::jd2::archive::ArchiveBasevirtual
initialize()protocols::jd2::archive::ArchiveBaseinlinevirtual
manager()protocols::jd2::archive::AbstractArchiveBaseinline
manager_ptr()protocols::jd2::archive::AbstractArchiveBaseinlineprotected
max_nstruct_protocols::jd2::archive::ArchiveBaseprivate
min_structures_for_acceptance_statistics_protocols::jd2::archive::ArchiveBaseprivate
name() const protocols::jd2::archive::AbstractArchiveBaseinline
nstruct() const protocols::jd2::archive::ArchiveBaseinline
nstruct_protocols::jd2::archive::ArchiveBaseprivate
options_registered_protocols::jd2::archive::ArchiveBaseprivatestatic
proposed_since_last_batch() const protocols::jd2::archive::ArchiveBaseinline
proposed_since_last_batch_protocols::jd2::archive::ArchiveBaseprivate
read_structures(core::io::silent::SilentFileData &, Batch const &batch)protocols::jd2::archive::ArchiveBasevirtual
register_options()protocols::jd2::archive::ArchiveBasestatic
reset_accept_counter()protocols::jd2::archive::ArchiveBaseinline
restore_from_file()protocols::jd2::archive::ArchiveBasevirtual
restore_status(std::istream &)protocols::jd2::archive::ArchiveBasevirtual
save_status(std::ostream &) const protocols::jd2::archive::ArchiveBasevirtual
save_to_file(std::string suffix="")protocols::jd2::archive::ArchiveBasevirtual
set_manager(ArchiveManagerAP manager)protocols::jd2::archive::AbstractArchiveBaseinlinevirtual
set_max_nstruct(core::Size setting)protocols::jd2::archive::ArchiveBaseinlineprotected
set_name(std::string const &set)protocols::jd2::archive::AbstractArchiveBaseinline
set_nstruct(core::Size set)protocols::jd2::archive::ArchiveBaseinline
SilentStructs typedefprotocols::jd2::archive::ArchiveBaseprotected
SOURCE_FILEprotocols::jd2::archive::ArchiveBaseprotectedstatic
statistics_valid()protocols::jd2::archive::ArchiveBaseinline
still_interested(jd2::archive::Batch const &) const protocols::jd2::archive::AbstractArchiveBaseinlinevirtual
TAG_IN_FILEprotocols::jd2::archive::ArchiveBaseprotectedstatic
total_accepts()protocols::jd2::archive::ArchiveBaseinline
total_accepts_protocols::jd2::archive::ArchiveBaseprivate
total_proposed()protocols::jd2::archive::ArchiveBaseinline
total_proposed_protocols::jd2::archive::ArchiveBaseprivate
~AbstractArchiveBase()protocols::jd2::archive::AbstractArchiveBasevirtual
~ArchiveBase()protocols::jd2::archive::ArchiveBase