protocols::protein_interface_design::filters::Torsion Class Reference

#include <TorsionFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::Torsion:

Collaboration diagram for protocols::protein_interface_design::filters::Torsion:

Public Member Functions
	Torsion ()
	default ctor More...
virtual bool	apply (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...
virtual void	report (std::ostream &out, core::pose::Pose const &pose) const
virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual protocols::filters::FilterOP	clone () const
virtual protocols::filters::FilterOP	fresh_instance () const
core::Real	compute (core::pose::Pose const &pose) const
virtual	~Torsion ()
void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
core::Real	lower () const
void	lower (core::Real const l)
core::Real	upper () const
void	upper (core::Real const u)
core::Size	resnum () const
void	resnum (core::Size const r)
void	torsion (std::string const t)
std::string	torsion () const
core::pack::task::TaskFactoryOP	task_factory () const
void	task_factory (core::pack::task::TaskFactoryOP tf)
void	task_factory_set (bool const b)
bool	task_factory_set () const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::Real	lower_
core::Real	upper_
core::Size	resnum_
std::string	torsion_
core::pack::task::TaskFactoryOP	task_factory_
bool	task_factory_set_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::Torsion::parent

private

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::Torsion::Torsion

(

)

default ctor

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::Torsion::~Torsion ( )

virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::Torsion::apply ( core::pose::Pose const &  pose) const

virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References lower(), core::conformation::Residue::name1(), core::conformation::Residue::name3(), core::pose::Pose::omega(), core::pose::Pose::pdb_info(), protocols::swa::phi(), core::pose::Pose::phi(), protocols::swa::psi(), core::pose::Pose::psi(), core::pose::Pose::residue(), protocols::rosetta_scripts::residue_packer_states(), resnum(), protocols::loops::start, protocols::loops::stop, task_factory(), task_factory_set(), torsion(), core::pose::Pose::total_residue(), and upper().

protocols::filters::FilterOP protocols::protein_interface_design::filters::Torsion::clone ( ) const

virtual

Implements protocols::filters::Filter.

References Torsion().

core::Real protocols::protein_interface_design::filters::Torsion::compute

(

core::pose::Pose const &

pose)

const

References core::pose::Pose::omega(), core::pose::Pose::phi(), core::pose::Pose::psi(), resnum(), and torsion().

Referenced by report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::Torsion::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References Torsion().

core::Real protocols::protein_interface_design::filters::Torsion::lower ( ) const

inline

References lower_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::Torsion::lower ( core::Real const  l)

inline

References lower_.

void protocols::protein_interface_design::filters::Torsion::parse_my_tag ( utility::tag::TagPtr const  tag, protocols::moves::DataMap &  data, protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &  pose  )

virtual

Reimplemented from protocols::filters::Filter.

References lower(), core::pose::parse_resnum(), protocols::rosetta_scripts::parse_task_operations(), resnum(), task_factory(), task_factory_set(), task_factory_set_, torsion(), and upper().

void protocols::protein_interface_design::filters::Torsion::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::protein_interface_design::filters::Torsion::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

core::Size protocols::protein_interface_design::filters::Torsion::resnum ( ) const

inline

References resnum_.

Referenced by apply(), compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::Torsion::resnum ( core::Size const  r)

inline

References resnum_.

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::Torsion::task_factory

(

)

const

References task_factory_.

Referenced by apply(), protocols::protein_interface_design::movers::Splice::apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::Torsion::task_factory

(

core::pack::task::TaskFactoryOP

tf)

References task_factory_.

void protocols::protein_interface_design::filters::Torsion::task_factory_set ( bool const  b)

inline

References protocols::match::upstream::b, and task_factory_set_.

bool protocols::protein_interface_design::filters::Torsion::task_factory_set ( ) const

inline

References task_factory_set_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::Torsion::torsion ( std::string const  t)

inline

References core::scoring::hbonds::t(), and torsion_.

std::string protocols::protein_interface_design::filters::Torsion::torsion ( ) const

inline

References torsion_.

Referenced by apply(), compute(), and parse_my_tag().

core::Real protocols::protein_interface_design::filters::Torsion::upper ( ) const

inline

References upper_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::Torsion::upper ( core::Real const  u)

inline

References upper_.

Member Data Documentation

core::Real protocols::protein_interface_design::filters::Torsion::lower_

private

Referenced by lower().

core::Size protocols::protein_interface_design::filters::Torsion::resnum_

private

Referenced by resnum().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::Torsion::task_factory_

private

Referenced by task_factory().

bool protocols::protein_interface_design::filters::Torsion::task_factory_set_

private

Referenced by parse_my_tag(), and task_factory_set().

std::string protocols::protein_interface_design::filters::Torsion::torsion_

private

Referenced by torsion().

core::Real protocols::protein_interface_design::filters::Torsion::upper_

private

Referenced by upper().

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/TorsionFilter.hh
• src/protocols/protein_interface_design/filters/TorsionFilter.cc