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CDRH3Modeler.cc File Reference

models CDR H3 loop using loop modeling More...

#include <protocols/antibody/CDRH3Modeler.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/chemical/VariantType.hh>
#include <core/fragment/BBTorsionSRFD.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/FragSet.hh>
#include <core/id/types.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pack/rotamer_set/UnboundRotamersOperation.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <core/pack/task/operation/OperateOnCertainResidues.hh>
#include <core/pack/task/operation/ResFilters.hh>
#include <core/pack/task/operation/ResLvlTaskOperations.hh>
#include <protocols/toolbox/task_operations/RestrictToInterface.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pack/dunbrack/RotamerConstraint.hh>
#include <basic/Tracer.hh>
#include <numeric/numeric.functions.hh>
#include <numeric/random/random.hh>
#include <numeric/xyz.functions.hh>
#include <protocols/simple_moves/FragmentMover.hh>
#include <protocols/loops/loop_closure/ccd/CcdLoopClosureMover.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/loop_mover/LoopMover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/moves/ChangeFoldTreeMover.hh>
#include <protocols/simple_moves/MinMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/simple_moves/RotamerTrialsMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <utility/exit.hh>
#include <utility/io/izstream.hh>
#include <utility/pointer/owning_ptr.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::antibody
 

Constant Groups

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::antibody
 

Functions

static
numeric::random::RandomGenerator 
RG (11141980)
 
static basic::Tracer TR ("protocols.antibody.CDRH3Modeler")
 
void protocols::antibody::simple_one_loop_fold_tree (pose::Pose &pose_in, loops::Loop const &loop)
 
void protocols::antibody::simple_fold_tree (pose::Pose &pose_in, Size jumppoint1, Size cutpoint, Size jumppoint2)
 
void protocols::antibody::read_H3_cter_fragment (antibody::Antibody &antibody_in, utility::vector1< fragment::FragData > &H3_base_library, bool is_camelid)
 

Detailed Description

models CDR H3 loop using loop modeling

Detailed:
Author
Aroop Sircar (aroop.nosp@m.sirc.nosp@m.ar@ya.nosp@m.hoo..nosp@m.com)

Function Documentation

static numeric::random::RandomGenerator RG ( 11141980  )
static
static basic::Tracer TR ( "protocols.antibody.CDRH3Modeler"  )
static