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Rosetta 3.5
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Rosetta 3.5
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This WorkUnit type has structures in it. Most Workunits should derive from this one rather THe the Base class. More...
#include <WorkUnitBase.hh>
Public Member Functions | |
| WorkUnit_SilentStructStore () | |
| virtual | ~WorkUnit_SilentStructStore () |
| virtual protocols::wum::WorkUnitBaseOP | clone () const |
| virtual void | run () |
| This Work unit doesnt do anything - its just keeps the structures. More... | |
| virtual void | serialize () |
| write decoys into serial data store overwritinge whatever was there before. It basically syncs the silent struct store with the derial data More... | |
| virtual void | deserialize () |
| Make ready for working. More... | |
| const protocols::wum::SilentStructStore & | decoys () const |
| Accessor for decoy store. More... | |
| protocols::wum::SilentStructStore & | decoys () |
| Accessor for decoy store. More... | |
 Public Member Functions inherited from protocols::wum::WorkUnitBase | |
| WorkUnitBase () | |
| virtual | ~WorkUnitBase () |
| virtual void | clear_serial_data () |
| Remove all data, make sure that the memory is also cleared, hence the cals to reserve. More... | |
| void | print (std::ostream &out, bool verbose=false) const |
| Print header information to the stream, single line by default or verbose if verbose is set to true. More... | |
| core::Size | id () |
| Accessor to the ID of the WorkUnit. More... | |
| core::Size | extra_data_1 () |
| Accessor to the extra_data_1 and 3 field of the header. More... | |
| core::Size | extra_data_3 () |
| void | add_blacklist (int mpi_rank) |
| Adds to the blacklist. More... | |
| void | clear_blacklist () |
| Erases the blacklist. More... | |
| bool | in_blacklist (int mpi_rank) |
| Finds in blacklist, true if is, false if it isn't. More... | |
| core::Size | get_run_time () |
| Returns the differrence between unix start and stop times. More... | |
| std::string | get_wu_type () const |
| Accessor to header structure, return the WorkUnit Type. More... | |
| void | set_wu_type (const std::string &text) |
| Accessor to header structure, sets the WorkUnit Type. More... | |
| std::string | get_options () const |
| Optain the options string from the header. More... | |
| virtual core::Size | mem_footprint () const |
| Return the memory usage of this WorkUnit. More... | |
| core::Size | last_received_from () |
Private Attributes | |
| protocols::wum::SilentStructStore | decoys_ |
| This WorkUnit type has structures in it. More... | |
Additional Inherited Members | |
| Protected Member Functions inherited from protocols::wum::WorkUnitBase | |
| virtual void | create_unique_id () |
| Make a unique number out of Processor Number and unix timestamp ? More... | |
| std::string & | serial_data () |
| Accessor to the serial data field. More... | |
| const std::string & | serial_data () const |
| Accessor to the serial data field. More... | |
| void | set_options (const std::string &text) |
| Accesor to the "options" text field. More... | |
| void | set_run_start () |
| Set the unixtime of the start of the execution of this WorkUnit. More... | |
| void | set_run_stop () |
| Set the unixtime of the stop of the execution of this WorkUnit. More... | |
| Protected Attributes inherited from protocols::wum::WorkUnitBase | |
| WU_Header | header |
| The header data. More... | |
| core::Size | last_received_from_ |
| Contains the serial number of whatever Rank/Node this WU was last receeived from. More... | |
| std::vector< int > | blacklist_ |
| Contains blacklist of nodes. This data is NOT sent, and is only used on the sending side to determine where not to send a workunit. More... | |
This WorkUnit type has structures in it. Most Workunits should derive from this one rather THe the Base class.
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inline |
Referenced by clone().
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inlinevirtual |
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inlinevirtual |
Reimplemented from protocols::wum::WorkUnitBase.
Reimplemented in protocols::wum::WorkUnit_MoverWrapper, protocols::relax::WorkUnit_BatchRelax_and_PostRescore, protocols::relax::WorkUnit_BatchRelax, and protocols::loophash::WorkUnit_LoopHash.
References WorkUnit_SilentStructStore().
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inline |
Accessor for decoy store.
References decoys_.
Referenced by protocols::wum::MPI_Relax::process_inbound_wus_master(), protocols::relax::WorkUnit_BatchRelax_and_PostRescore::rescore_all_decoys(), protocols::loophash::WorkUnit_LoopHash::run(), protocols::relax::WorkUnit_BatchRelax::run(), protocols::wum::WorkUnit_MoverWrapper::run(), and protocols::relax::WorkUnit_BatchRelax_and_PostRescore::trim().
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inline |
Accessor for decoy store.
References decoys_.
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virtual |
Make ready for working.
Reimplemented from protocols::wum::WorkUnitBase.
References protocols::wum::SilentStructStore::clear(), decoys_, protocols::wum::SilentStructStore::read_from_string(), and protocols::wum::WorkUnitBase::serial_data().
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inlinevirtual |
This Work unit doesnt do anything - its just keeps the structures.
Reimplemented from protocols::wum::WorkUnitBase.
Reimplemented in protocols::wum::WorkUnit_MoverWrapper, protocols::relax::WorkUnit_BatchRelax, and protocols::loophash::WorkUnit_LoopHash.
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virtual |
write decoys into serial data store overwritinge whatever was there before. It basically syncs the silent struct store with the derial data
Reimplemented from protocols::wum::WorkUnitBase.
References decoys_, protocols::wum::WorkUnitBase::serial_data(), and protocols::wum::SilentStructStore::serialize().
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private |
This WorkUnit type has structures in it.
Referenced by decoys(), deserialize(), and serialize().
1.8.4