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core::pack::task::operation::DisallowIfNonnative Class Reference

DisallowIfNonnative allows you to define what residues are NOT allowed in packing unless that residue is present in the input. Behaves like RestrictAbsentCanonicalAAS and NOTAA except will allow a resitricted residue at a position if it is there to begin with at the time of Task creation. Will do all residues unless otherwise defined by selection syntax below. More...

#include <TaskOperations.hh>

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Public Types

typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr TagPtr
 
typedef pose::Pose Pose
 

Public Member Functions

 DisallowIfNonnative ()
 
 DisallowIfNonnative (utility::vector1< bool > disallowed_aas)
 
 DisallowIfNonnative (utility::vector1< bool > disallowed_aas, utility::vector1< core::Size > res_selection)
 
virtual ~DisallowIfNonnative ()
 
virtual TaskOperationOP clone () const
 Create another task operation of the type matching the most-derived version of the class. More...
 
virtual void apply (pose::Pose const &, PackerTask &) const
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void clear ()
 
void disallow_aas (utility::vector1< bool > const &cannonical_disallowed)
 
void disallow_aas (std::string const &aa_string)
 
void restrict_to_residue (core::Size const &resid)
 
void restrict_to_residue (utility::vector1< core::Size > const &residues)
 
virtual void parse_tag (TagPtr)
 Used to parse an xml-like tag to load parameters and properties. More...
 
virtual void parse_def (utility::lua::LuaObject const &def)
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual ~TaskOperation ()
 

Private Member Functions

utility::vector1< boolinvert_vector (utility::vector1< bool > disallowed_aas)
 

Private Attributes

utility::vector1< core::Sizeresidue_selection_
 
utility::vector1< booldisallowed_aas_
 
utility::vector1< boolallowed_aas_
 

Detailed Description

DisallowIfNonnative allows you to define what residues are NOT allowed in packing unless that residue is present in the input. Behaves like RestrictAbsentCanonicalAAS and NOTAA except will allow a resitricted residue at a position if it is there to begin with at the time of Task creation. Will do all residues unless otherwise defined by selection syntax below.

Member Typedef Documentation

Constructor & Destructor Documentation

core::pack::task::operation::DisallowIfNonnative::DisallowIfNonnative ( )

Referenced by clone().

core::pack::task::operation::DisallowIfNonnative::DisallowIfNonnative ( utility::vector1< bool disallowed_aas)
core::pack::task::operation::DisallowIfNonnative::DisallowIfNonnative ( utility::vector1< bool disallowed_aas,
utility::vector1< core::Size res_selection 
)
core::pack::task::operation::DisallowIfNonnative::~DisallowIfNonnative ( )
virtual

Member Function Documentation

void core::pack::task::operation::DisallowIfNonnative::apply ( pose::Pose const &  ,
PackerTask  
) const
virtual
void core::pack::task::operation::DisallowIfNonnative::clear ( )
TaskOperationOP core::pack::task::operation::DisallowIfNonnative::clone ( ) const
virtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

References DisallowIfNonnative().

void core::pack::task::operation::DisallowIfNonnative::disallow_aas ( utility::vector1< bool > const &  cannonical_disallowed)
void core::pack::task::operation::DisallowIfNonnative::disallow_aas ( std::string const &  aa_string)
utility::vector1< bool > core::pack::task::operation::DisallowIfNonnative::invert_vector ( utility::vector1< bool disallowed_aas)
private

References disallowed_aas_.

Referenced by disallow_aas().

void core::pack::task::operation::DisallowIfNonnative::parse_def ( utility::lua::LuaObject const &  def)
virtual
void core::pack::task::operation::DisallowIfNonnative::parse_tag ( TagPtr  tag)
virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References disallow_aas(), and restrict_to_residue().

void core::pack::task::operation::DisallowIfNonnative::restrict_to_residue ( core::Size const &  resid)

References residue_selection_.

Referenced by parse_def(), and parse_tag().

void core::pack::task::operation::DisallowIfNonnative::restrict_to_residue ( utility::vector1< core::Size > const &  residues)

References residue_selection_.

Member Data Documentation

utility::vector1< bool > core::pack::task::operation::DisallowIfNonnative::allowed_aas_
private

Referenced by apply(), clear(), and disallow_aas().

utility::vector1< bool > core::pack::task::operation::DisallowIfNonnative::disallowed_aas_
private

Referenced by clear(), disallow_aas(), and invert_vector().

utility::vector1< core::Size > core::pack::task::operation::DisallowIfNonnative::residue_selection_
private

Referenced by apply(), clear(), and restrict_to_residue().


The documentation for this class was generated from the following files: