protocols::motifs::MotifSearch Member List

This is the complete list of members for protocols::motifs::MotifSearch, including all inherited members.

bp_motifhits(Size const seqpos)	protocols::motifs::MotifSearch
bp_rotamers(Size const seqpos)	protocols::motifs::MotifSearch
bpdata_	protocols::motifs::MotifSearch	private
bpdata_filename_	protocols::motifs::MotifSearch	private
build_positionOPs() const	protocols::motifs::MotifSearch	inline
build_positionOPs_	protocols::motifs::MotifSearch	private
BuildPosition_from_Size(Pose const &pose, Size const input_BP)	protocols::motifs::MotifSearch
bump_check_	protocols::motifs::MotifSearch	private
clear_bprots_	protocols::motifs::MotifSearch	private
data_	protocols::motifs::MotifSearch	private
data_filename_	protocols::motifs::MotifSearch	private
defs2BuildPositions(Pose const &pose, protocols::dna::DnaDesignDefOPs const &defs)	protocols::motifs::MotifSearch
defs2BuildPositions_findts(Pose const &pose, protocols::dna::DnaDesignDefOPs const &defs)	protocols::motifs::MotifSearch
dna_positions() const	protocols::motifs::MotifSearch	inline
dna_positions_	protocols::motifs::MotifSearch	private
DnaDesignDefOP typedef	protocols::motifs::MotifSearch
DnaDesignDefOPs typedef	protocols::motifs::MotifSearch
dtest_cutoff() const	protocols::motifs::MotifSearch	inline
dtest_cutoff_	protocols::motifs::MotifSearch	private
dump_motifs_	protocols::motifs::MotifSearch	private
identify_motif_build_positions(Pose const &pose, Sizes &build_positions)	protocols::motifs::MotifSearch
identify_motif_BuildPositions(Pose const &pose)	protocols::motifs::MotifSearch
incorporate_motifs(Pose const &pose)	protocols::motifs::MotifSearch
init_options()	protocols::motifs::MotifSearch	private
initialize(Pose &pose, Sizes &input_BPs)	protocols::motifs::MotifSearch
map2keyvector(std::map< Size, std::set< std::string > > mappositions)	protocols::motifs::MotifSearch
minimize() const	protocols::motifs::MotifSearch	inline
minimize_	protocols::motifs::MotifSearch	private
motif_library() const	protocols::motifs::MotifSearch	inline
motif_library_	protocols::motifs::MotifSearch	private
MotifSearch()	protocols::motifs::MotifSearch
MotifSearch(MotifSearch const &src)	protocols::motifs::MotifSearch
operator=(MotifSearch const &src)	protocols::motifs::MotifSearch
output_	protocols::motifs::MotifSearch	private
output_filename_	protocols::motifs::MotifSearch	private
override_option_input(Real const &r1, Real const &z1, Real const &r2, Real const &z2, Real const &d1, Size const &rlevel, bool const bpdata, bool const bump_check)	protocols::motifs::MotifSearch
Pose typedef	protocols::motifs::MotifSearch
position_vector_setup(Pose const &pose)	protocols::motifs::MotifSearch
protein_dna_motif()	protocols::motifs::MotifSearch
protein_DNA_motif_build_positions_JA(Pose const &pose, Sizes &build_positions, Sizes &target_positions)	protocols::motifs::MotifSearch
protein_DNA_motif_target_positions_JA(Pose const &pose, Sizes &build_positions, Sizes &target_positions, Sizes &short_tl)	protocols::motifs::MotifSearch
protein_positions() const	protocols::motifs::MotifSearch	inline
protein_positions_	protocols::motifs::MotifSearch	private
quick_and_dirty_	protocols::motifs::MotifSearch	private
Real typedef	protocols::motifs::MotifSearch
rerun_motifsearch_	protocols::motifs::MotifSearch	private
reset_option_input()	protocols::motifs::MotifSearch
restrict_to_wt_	protocols::motifs::MotifSearch	private
rmsd_cutoff_1() const	protocols::motifs::MotifSearch	inline
rmsd_cutoff_1_	protocols::motifs::MotifSearch	private
rmsd_cutoff_2() const	protocols::motifs::MotifSearch	inline
rmsd_cutoff_2_	protocols::motifs::MotifSearch	private
rot_level() const	protocols::motifs::MotifSearch	inline
rot_level_	protocols::motifs::MotifSearch	private
rots2add_	protocols::motifs::MotifSearch	private
run(Pose &pose, Sizes &input_BPs)	protocols::motifs::MotifSearch
set_motif_library(MotifLibrary &motiflibrary)	protocols::motifs::MotifSearch
shorten_target_list(Pose const &pose, Size const bp, Sizes &full_tl)	protocols::motifs::MotifSearch
Size typedef	protocols::motifs::MotifSearch
Sizes typedef	protocols::motifs::MotifSearch
target_conformers_map() const	protocols::motifs::MotifSearch	inline
target_conformers_map_	protocols::motifs::MotifSearch	private
target_positions() const	protocols::motifs::MotifSearch	inline
target_positions_	protocols::motifs::MotifSearch	private
ztest_cutoff_1() const	protocols::motifs::MotifSearch	inline
ztest_cutoff_1_	protocols::motifs::MotifSearch	private
ztest_cutoff_2() const	protocols::motifs::MotifSearch	inline
ztest_cutoff_2_	protocols::motifs::MotifSearch	private
~MotifSearch()	protocols::motifs::MotifSearch	virtual