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protocols::scoring::methods::saxs::PDDFEnergy Member List

This is the complete list of members for protocols::scoring::methods::saxs::PDDFEnergy, including all inherited members.

a_ids_protocols::scoring::methods::saxs::PDDFEnergymutableprivate
atomic_interaction_cutoff() const core::scoring::methods::WholeStructureEnergyinlinevirtual
bin_size_protocols::scoring::methods::saxs::PDDFEnergyprivate
clone() const protocols::scoring::methods::saxs::PDDFEnergyinlinevirtual
compute_chi(utility::vector1< core::Real > const &, utility::vector1< core::Real > const &) const protocols::scoring::methods::saxs::PDDFEnergy
compute_L1(utility::vector1< core::Real > const &, utility::vector1< core::Real > const &) const protocols::scoring::methods::saxs::PDDFEnergy
compute_pddf(const core::pose::Pose &) const protocols::scoring::methods::saxs::PDDFEnergy
compute_pddf_without_ff(const core::pose::Pose &) const protocols::scoring::methods::saxs::PDDFEnergy
create_energy_method(core::scoring::methods::EnergyMethodOptions const &) const protocols::scoring::methods::saxs::PDDFEnergyinline
create_pddf(core::pose::Pose &, core::Real, core::Real, core::Real)protocols::scoring::methods::saxs::PDDFEnergy
d_protocols::scoring::methods::saxs::PDDFEnergyprivate
defines_high_order_terms(pose::Pose const &) const core::scoring::methods::EnergyMethodvirtual
dmatrix_protocols::scoring::methods::saxs::PDDFEnergymutableprivate
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
EnergyMethod(EnergyMethod const &src)core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const core::scoring::methods::EnergyMethodvirtual
evaluate_pddf_energy(const core::pose::Pose &pose) const protocols::scoring::methods::saxs::PDDFEnergy
factors_protocols::scoring::methods::saxs::PDDFEnergymutableprivate
ff_manager_protocols::scoring::methods::saxs::PDDFEnergyprivate
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const core::scoring::methods::EnergyMethodvirtual
finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const protocols::scoring::methods::saxs::PDDFEnergyvirtual
get_dist_bins()protocols::scoring::methods::saxs::PDDFEnergyinline
get_pddf()protocols::scoring::methods::saxs::PDDFEnergyinline
if_fit_area_protocols::scoring::methods::saxs::PDDFEnergyprivate
if_hydrogens_protocols::scoring::methods::saxs::PDDFEnergyprivate
indicate_required_context_graphs(utility::vector1< bool > &) const protocols::scoring::methods::saxs::PDDFEnergyinlinevirtual
is_glob_protocols::scoring::methods::saxs::PDDFEnergymutableprivate
max_bin_protocols::scoring::methods::saxs::PDDFEnergyprivate
method_type() const core::scoring::methods::WholeStructureEnergyvirtual
min_bin_protocols::scoring::methods::saxs::PDDFEnergyprivate
minimize_in_whole_structure_context(pose::Pose const &) const core::scoring::methods::EnergyMethodvirtual
norm_protocols::scoring::methods::saxs::PDDFEnergyprivate
parent typedefcore::scoring::methods::WholeStructureEnergy
PDDFEnergy()protocols::scoring::methods::saxs::PDDFEnergy
PDDFEnergy(utility::vector1< core::Real > const &, utility::vector1< core::Real > const &)protocols::scoring::methods::saxs::PDDFEnergy
pose_pddf_protocols::scoring::methods::saxs::PDDFEnergymutableprivate
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const core::scoring::methods::EnergyMethodvirtual
r_ids_protocols::scoring::methods::saxs::PDDFEnergymutableprivate
read_pddf(std::string)protocols::scoring::methods::saxs::PDDFEnergyprivate
reference_pddf_protocols::scoring::methods::saxs::PDDFEnergyprivate
score_types() const core::scoring::methods::EnergyMethodinline
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethodprotected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const core::scoring::methods::EnergyMethodvirtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const core::scoring::methods::EnergyMethodvirtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const core::scoring::methods::EnergyMethodvirtual
setup_for_scoring(pose::Pose &, ScoreFunction const &) const core::scoring::methods::EnergyMethodvirtual
update_residue_for_packing(pose::Pose &, Size resid) const core::scoring::methods::EnergyMethodvirtual
version() const protocols::scoring::methods::saxs::PDDFEnergyprivatevirtual
WholeStructureEnergy(EnergyMethodCreatorOP)core::scoring::methods::WholeStructureEnergy
~EnergyMethod()core::scoring::methods::EnergyMethodvirtual
~PDDFEnergy()protocols::scoring::methods::saxs::PDDFEnergyinlinevirtual
~WholeStructureEnergy()core::scoring::methods::WholeStructureEnergyinlinevirtual