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protocols::fldsgn::filters::HSSTripletFilter Class Reference

#include <HSSTripletFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::HSSTripletFilter:
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Collaboration diagram for protocols::fldsgn::filters::HSSTripletFilter:
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Public Types

typedef protocols::filters::Filter Super
 
typedef protocols::filters::Filter Filter
 
typedef std::string String
 
typedef core::Real Real
 
typedef core::Size Size
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::pose::Pose Pose
 
typedef
protocols::fldsgn::topology::HSSTriplet 
HSSTriplet
 
typedef
protocols::fldsgn::topology::HSSTriplets 
HSSTriplets
 
typedef
protocols::fldsgn::topology::HSSTripletSet 
HSSTripletSet
 
typedef
protocols::fldsgn::topology::HSSTripletSetOP 
HSSTripletSetOP
 
typedef utility::tag::TagPtr TagPtr
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef protocols::moves::DataMap DataMap
 
typedef
protocols::moves::Movers_map 
Movers_map
 

Public Member Functions

 HSSTripletFilter ()
 
 HSSTripletFilter (HSSTriplets const &hss3s)
 
 HSSTripletFilter (String const &hss3s)
 
 HSSTripletFilter (HSSTripletFilter const &rval)
 
virtual ~HSSTripletFilter ()
 
virtual FilterOP clone () const
 
virtual FilterOP fresh_instance () const
 
void add_hsstriplets (HSSTriplets const &hss3s)
 
void secstruct (String const &ss)
 
void filter_min_dist (Real const r)
 
void filter_max_dist (Real const r)
 maximum distance for filtering More...
 
void filter_min_angle (Real const r)
 miniimum angle for filtering More...
 
void filter_max_angle (Real const r)
 maximum angle for filtering More...
 
void output_id (Size const i)
 set output id More...
 
void output_type (String const &s)
 set output type More...
 
virtual std::string name () const
 
virtual void parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &)
 parse xml More...
 
Real report_sm (Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
Real compute (Pose const &pose) const
 
virtual bool apply (Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual void report (std::ostream &, core::pose::Pose const &) const
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 

Private Attributes

HSSTripletSetOP hss3set_
 hsstriplet More...
 
String secstruct_
 if value is empty, dssp will run for ss definition ( default is emptry ) More...
 
Real filter_min_dist_
 filtered min distance between helix and sheet More...
 
Real filter_max_dist_
 filtered max distance between helix and sheet More...
 
Real filter_min_angle_
 filtered min angle between helix and sheet More...
 
Real filter_max_angle_
 filtered max angle between helix and sheet More...
 
Size output_id_
 output id of HSSTriplet More...
 
String output_type_
 output type, dist or angle More...
 
Real output_value_
 output value, the result of filterring calculation More...
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::fldsgn::filters::HSSTripletFilter::HSSTripletFilter ( )

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::HSSTripletFilter::HSSTripletFilter ( HSSTriplets const &  hss3s)
protocols::fldsgn::filters::HSSTripletFilter::HSSTripletFilter ( String const &  hss3s)
protocols::fldsgn::filters::HSSTripletFilter::HSSTripletFilter ( HSSTripletFilter const &  rval)
virtual protocols::fldsgn::filters::HSSTripletFilter::~HSSTripletFilter ( )
inlinevirtual

Member Function Documentation

void protocols::fldsgn::filters::HSSTripletFilter::add_hsstriplets ( HSSTriplets const &  hss3s)

References hss3set_.

Referenced by parse_my_tag().

bool protocols::fldsgn::filters::HSSTripletFilter::apply ( Pose const &  pose) const
virtual
virtual FilterOP protocols::fldsgn::filters::HSSTripletFilter::clone ( ) const
inlinevirtual
HSSTripletFilter::Real protocols::fldsgn::filters::HSSTripletFilter::compute ( Pose const &  pose) const

References apply(), and output_value_.

Referenced by report_sm().

void protocols::fldsgn::filters::HSSTripletFilter::filter_max_angle ( Real const  r)

maximum angle for filtering

References filter_max_angle_.

void protocols::fldsgn::filters::HSSTripletFilter::filter_max_dist ( Real const  r)

maximum distance for filtering

References filter_max_dist_.

void protocols::fldsgn::filters::HSSTripletFilter::filter_min_angle ( Real const  r)

miniimum angle for filtering

References filter_min_angle_.

void protocols::fldsgn::filters::HSSTripletFilter::filter_min_dist ( Real const  r)

References filter_min_dist_.

virtual FilterOP protocols::fldsgn::filters::HSSTripletFilter::fresh_instance ( ) const
inlinevirtual
virtual std::string protocols::fldsgn::filters::HSSTripletFilter::name ( ) const
inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::fldsgn::filters::HSSTripletFilter::output_id ( Size const  i)

set output id

maximum angle for filtering

References output_id_.

void protocols::fldsgn::filters::HSSTripletFilter::output_type ( String const &  s)

set output type

References output_type_.

void protocols::fldsgn::filters::HSSTripletFilter::parse_my_tag ( TagPtr const  tag,
DataMap ,
Filters_map const &  ,
Movers_map const &  ,
Pose const &   
)
virtual
HSSTripletFilter::Real protocols::fldsgn::filters::HSSTripletFilter::report_sm ( Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::fldsgn::filters::HSSTripletFilter::secstruct ( String const &  ss)

References secstruct_.

Member Data Documentation

Real protocols::fldsgn::filters::HSSTripletFilter::filter_max_angle_
private

filtered max angle between helix and sheet

Referenced by apply(), filter_max_angle(), and parse_my_tag().

Real protocols::fldsgn::filters::HSSTripletFilter::filter_max_dist_
private

filtered max distance between helix and sheet

Referenced by apply(), filter_max_dist(), and parse_my_tag().

Real protocols::fldsgn::filters::HSSTripletFilter::filter_min_angle_
private

filtered min angle between helix and sheet

Referenced by apply(), filter_min_angle(), and parse_my_tag().

Real protocols::fldsgn::filters::HSSTripletFilter::filter_min_dist_
private

filtered min distance between helix and sheet

Referenced by apply(), filter_min_dist(), and parse_my_tag().

HSSTripletSetOP protocols::fldsgn::filters::HSSTripletFilter::hss3set_
private

hsstriplet

Referenced by add_hsstriplets(), apply(), and parse_my_tag().

Size protocols::fldsgn::filters::HSSTripletFilter::output_id_
private

output id of HSSTriplet

Referenced by apply(), output_id(), and parse_my_tag().

String protocols::fldsgn::filters::HSSTripletFilter::output_type_
private

output type, dist or angle

Referenced by apply(), output_type(), and parse_my_tag().

Real protocols::fldsgn::filters::HSSTripletFilter::output_value_
mutableprivate

output value, the result of filterring calculation

Referenced by apply(), and compute().

String protocols::fldsgn::filters::HSSTripletFilter::secstruct_
mutableprivate

if value is empty, dssp will run for ss definition ( default is emptry )

Referenced by apply(), parse_my_tag(), and secstruct().


The documentation for this class was generated from the following files: