protocols::motifs::MotifLibrary Class Reference

#include <MotifLibrary.hh>

Inheritance diagram for protocols::motifs::MotifLibrary:

Collaboration diagram for protocols::motifs::MotifLibrary:

Public Types
typedef utility::vector1 < utility::file::FileName > const	FileNames

Public Member Functions
	MotifLibrary ()
virtual	~MotifLibrary ()
	MotifLibrary (utility::vector1< utility::file::FileName > const &motif_filenames)
	MotifLibrary (std::istream &motif_info)
void	add_to_library (Motif const &new_motif)
	MotifLibrary (std::istream &motif_info, core::Size ligand_marker)
void	add_ligand_from_file (std::string const &motif_filename)
void	add_from_file (std::string const &motif_filename)
core::Size	nmotifs ()
MotifCOPs::const_iterator	begin ()
MotifCOPs::const_iterator	end ()
MotifCOPs::const_iterator	begin () const
MotifCOPs::const_iterator	end () const
MotifCOPs const &	library () const

Private Attributes
MotifCOPs	library_

Friends
std::ostream &	operator<< (std::ostream &os, MotifLibrary const &mot_lib)

Member Typedef Documentation

typedef utility::vector1< utility::file::FileName > const protocols::motifs::MotifLibrary::FileNames

Constructor & Destructor Documentation

protocols::motifs::MotifLibrary::MotifLibrary

(

)

protocols::motifs::MotifLibrary::~MotifLibrary ( )

virtual

protocols::motifs::MotifLibrary::MotifLibrary

(

utility::vector1< utility::file::FileName > const &

motif_filenames)

References add_to_library(), protocols::swa::rna::file_exists(), protocols::abinitio::filename(), and protocols::motifs::single_motif_from_filename().

protocols::motifs::MotifLibrary::MotifLibrary

(

std::istream &

motif_info)

References add_to_library(), and protocols::motifs::single_motif_from_stream().

protocols::motifs::MotifLibrary::MotifLibrary	(	std::istream &	motif_info,
		core::Size	ligand_marker
	)

References add_to_library(), and protocols::motifs::single_ligand_motif_from_stream().

Member Function Documentation

void protocols::motifs::MotifLibrary::add_from_file

(

std::string const &

motif_filename)

References add_to_library(), begin(), and end().

Referenced by protocols::motifs::get_MotifLibrary_user().

void protocols::motifs::MotifLibrary::add_ligand_from_file

(

std::string const &

motif_filename)

References add_to_library(), begin(), and end().

Referenced by protocols::motifs::get_LigandMotifLibrary_user().

void protocols::motifs::MotifLibrary::add_to_library

(

Motif const &

new_motif)

References protocols::motifs::Motif::clone(), and library_.

Referenced by add_from_file(), add_ligand_from_file(), and MotifLibrary().

MotifCOPs::const_iterator protocols::motifs::MotifLibrary::begin ( )

inline

References library_.

Referenced by add_from_file(), add_ligand_from_file(), protocols::motifs::IRCollection::IRCollection(), protocols::motifs::operator<<(), protocols::motifs::MotifSearch::set_motif_library(), and protocols::motifs::LigandMotifSearch::set_motif_library().

MotifCOPs::const_iterator protocols::motifs::MotifLibrary::begin ( ) const

inline

References library_.

MotifCOPs::const_iterator protocols::motifs::MotifLibrary::end ( )

inline

References library_.

Referenced by add_from_file(), add_ligand_from_file(), protocols::motifs::IRCollection::IRCollection(), protocols::motifs::operator<<(), protocols::motifs::MotifSearch::set_motif_library(), and protocols::motifs::LigandMotifSearch::set_motif_library().

MotifCOPs::const_iterator protocols::motifs::MotifLibrary::end ( ) const

inline

References library_.

MotifCOPs const& protocols::motifs::MotifLibrary::library ( ) const

inline

References library_.

Referenced by protocols::motifs::MotifSearch::initialize(), and protocols::motifs::LigandMotifSearch::initialize().

core::Size protocols::motifs::MotifLibrary::nmotifs

(

)

References library_.

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  os, MotifLibrary const &  mot_lib  )

friend

Member Data Documentation

MotifCOPs protocols::motifs::MotifLibrary::library_

private

Referenced by add_to_library(), begin(), end(), library(), and nmotifs().

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The documentation for this class was generated from the following files:

• src/protocols/motifs/MotifLibrary.hh
• src/protocols/motifs/MotifLibrary.cc