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protocols::rna::RNA_HelixAssembler Member List

This is the complete list of members for protocols::rna::RNA_HelixAssembler, including all inherited members.

ALPHA_A_FORMprotocols::rna::RNA_HelixAssemblerprivate
apply(core::pose::Pose &pose)protocols::rna::RNA_HelixAssemblervirtual
apply(core::pose::Pose &pose, std::string const &sequence)protocols::rna::RNA_HelixAssembler
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
BETA_A_FORMprotocols::rna::RNA_HelixAssemblerprivate
build_on_base_pair(core::pose::Pose &pose, Size const &n, char const &seq1, char const &seq2)protocols::rna::RNA_HelixAssemblerprivate
CHI_A_FORMprotocols::rna::RNA_HelixAssemblerprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::rna::RNA_HelixAssemblervirtual
create()protocols::moves::Movervirtual
DELTA_A_FORMprotocols::rna::RNA_HelixAssemblerprivate
EPSILON_A_FORMprotocols::rna::RNA_HelixAssemblerprivate
Filters_map typedefprotocols::moves::Mover
fresh_instance() const protocols::moves::Movervirtual
GAMMA_A_FORMprotocols::rna::RNA_HelixAssemblerprivate
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::rna::RNA_HelixAssemblervirtual
get_native_pose() const protocols::moves::Mover
get_rid_of_capping_base_pairs(core::pose::Pose &pose)protocols::rna::RNA_HelixAssemblerprivate
get_type() const protocols::moves::Moverinline
ideal_coord_protocols::rna::RNA_HelixAssemblerprivate
ideal_jumpprotocols::rna::RNA_HelixAssemblerprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
minimize_all_protocols::rna::RNA_HelixAssemblerprivate
minimize_base_step(core::pose::Pose &pose, Size const n)protocols::rna::RNA_HelixAssemblerprivate
model_and_remove_capping_residues_protocols::rna::RNA_HelixAssemblerprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
NU1_A_FORMprotocols::rna::RNA_HelixAssemblerprivate
NU2_A_FORMprotocols::rna::RNA_HelixAssemblerprivate
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
perturb_amplitude_protocols::rna::RNA_HelixAssemblerprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
put_constraints_on_base_step(core::pose::Pose &pose, Size const &n)protocols::rna::RNA_HelixAssemblerprivate
random_perturbation(bool const &setting)protocols::rna::RNA_HelixAssemblerinline
random_perturbation_protocols::rna::RNA_HelixAssemblerprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
RNA_HelixAssembler()protocols::rna::RNA_HelixAssembler
rsd_setprotocols::rna::RNA_HelixAssemblerprivate
save_state(SerializableState &state)protocols::moves::Movervirtual
scorefxnprotocols::rna::RNA_HelixAssemblerprivate
set_Aform_torsions(core::pose::Pose &pose, Size const &n)protocols::rna::RNA_HelixAssemblerprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_minimize_all(bool const &setting)protocols::rna::RNA_HelixAssemblerinline
set_model_and_remove_capping_residues(bool setting)protocols::rna::RNA_HelixAssemblerinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_scorefxn(core::scoring::ScoreFunctionOP setting)protocols::rna::RNA_HelixAssembler
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
use_phenix_geo(bool const setting)protocols::rna::RNA_HelixAssembler
use_phenix_geo_protocols::rna::RNA_HelixAssemblerprivate
verbose_protocols::rna::RNA_HelixAssemblerprivate
ZETA_A_FORMprotocols::rna::RNA_HelixAssemblerprivate
~Mover()protocols::moves::Movervirtual