protocols::constraints_additional::SequenceCoupling1BDConstraint Member List

This is the complete list of members for protocols::constraints_additional::SequenceCoupling1BDConstraint, including all inherited members.

atom(core::Size const ) const	core::scoring::constraints::SequenceProfileConstraint	inlinevirtual
AtomID typedef	core::scoring::constraints::Constraint
choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &)	core::scoring::constraints::Constraint	inlinevirtual
clone() const	protocols::constraints_additional::SequenceCoupling1BDConstraint	virtual
core::scoring::constraints::Constraint::clone(FuncOP) const	core::scoring::constraints::Constraint	inlinevirtual
Conformation typedef	protocols::constraints_additional::SequenceCoupling1BDConstraint
Constraint(ScoreType const &t)	core::scoring::constraints::Constraint	inline
ConstraintOP typedef	protocols::constraints_additional::SequenceCoupling1BDConstraint
dist(core::pose::Pose const &) const	core::scoring::constraints::Constraint	inlinevirtual
dist(XYZ_Func const &) const	core::scoring::constraints::Constraint	inlinevirtual
effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const	core::scoring::constraints::Constraint	inlinevirtual
EnergyMap typedef	protocols::constraints_additional::SequenceCoupling1BDConstraint
fill_f1_f2(AtomID const &, XYZ_Func const &, core::Vector &, core::Vector &, EnergyMap const &) const	protocols::constraints_additional::SequenceCoupling1BDConstraint	virtual
FuncFactory typedef	protocols::constraints_additional::SequenceCoupling1BDConstraint
get_func() const	core::scoring::constraints::Constraint	inlinevirtual
natoms() const	core::scoring::constraints::SequenceProfileConstraint	inlinevirtual
operator!=(Constraint const &other) const	core::scoring::constraints::Constraint	inline
operator==(Constraint const &) const	core::scoring::constraints::Constraint	inlinevirtual
Pose typedef	protocols::constraints_additional::SequenceCoupling1BDConstraint
profile_mapping() const	core::scoring::constraints::SequenceProfileConstraint
read_constraint(std::istream &, core::pose::Pose const &)	core::scoring::constraints::Constraint	inlinevirtual
read_data(std::istream &)	core::scoring::constraints::Constraint	inlinevirtual
read_def(std::istream &, Pose const &, FuncFactory const &)	protocols::constraints_additional::SequenceCoupling1BDConstraint	virtual
remap_resid(SequenceMapping const &) const	core::scoring::constraints::SequenceProfileConstraint	virtual
remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP map=NULL) const	core::scoring::constraints::SequenceProfileConstraint	virtual
residues() const	core::scoring::constraints::SequenceProfileConstraint	virtual
score(XYZ_Func const &, EnergyMap const &, EnergyMap &) const	protocols::constraints_additional::SequenceCoupling1BDConstraint	virtual
core::scoring::constraints::Constraint::score(conformation::Conformation const &) const	core::scoring::constraints::Constraint	inlinevirtual
score_type() const	core::scoring::constraints::Constraint	inline
seqpos() const	core::scoring::constraints::SequenceProfileConstraint	inline
seqpos(core::Size seqpos)	core::scoring::constraints::SequenceProfileConstraint	inline
sequence_profile() const	core::scoring::constraints::SequenceProfileConstraint
SequenceCoupling typedef	protocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceCoupling1BDConstraint()	protocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceCoupling1BDConstraint(Pose const &, core::Size, SequenceProfileCOP profile)	protocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceCoupling1BDConstraint(core::Size, SequenceProfileCOP profile)	protocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceCouplingCOP typedef	protocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceMapping typedef	protocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceProfile typedef	core::scoring::constraints::SequenceProfileConstraint
SequenceProfileConstraint()	core::scoring::constraints::SequenceProfileConstraint
SequenceProfileConstraint(Pose const &, core::Size, SequenceProfileCOP profile=NULL, core::id::SequenceMappingCOP mapping=NULL)	core::scoring::constraints::SequenceProfileConstraint
SequenceProfileConstraint(core::Size, SequenceProfileCOP profile=NULL, core::id::SequenceMappingCOP mapping=NULL)	core::scoring::constraints::SequenceProfileConstraint
SequenceProfileCOP typedef	core::scoring::constraints::SequenceProfileConstraint
set_sequence_profile(SequenceProfileCOP profile, core::id::SequenceMappingCOP mapping=NULL)	core::scoring::constraints::SequenceProfileConstraint
setup_for_derivatives(XYZ_Func const &, ScoreFunction const &) const	core::scoring::constraints::Constraint	inlinevirtual
setup_for_scoring(XYZ_Func const &, ScoreFunction const &) const	core::scoring::constraints::Constraint	inlinevirtual
show(std::ostream &out) const	protocols::constraints_additional::SequenceCoupling1BDConstraint	virtual
show_def(std::ostream &, Pose const &) const	core::scoring::constraints::SequenceProfileConstraint	virtual
show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const	core::scoring::constraints::Constraint	virtual
steal_def(pose::Pose const &)	core::scoring::constraints::Constraint	inlinevirtual
to_string() const	core::scoring::constraints::Constraint	inline
type() const	protocols::constraints_additional::SequenceCoupling1BDConstraint	inlinevirtual
weight(core::Real const w)	core::scoring::constraints::SequenceProfileConstraint
weight() const	core::scoring::constraints::SequenceProfileConstraint
XYZ_Func typedef	protocols::constraints_additional::SequenceCoupling1BDConstraint
~Constraint()	core::scoring::constraints::Constraint	virtual
~SequenceCoupling1BDConstraint()	protocols::constraints_additional::SequenceCoupling1BDConstraint	virtual
~SequenceProfileConstraint()	core::scoring::constraints::SequenceProfileConstraint	virtual