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protocols::constraints_additional::SequenceCoupling1BDConstraint Member List

This is the complete list of members for protocols::constraints_additional::SequenceCoupling1BDConstraint, including all inherited members.

atom(core::Size const ) const core::scoring::constraints::SequenceProfileConstraintinlinevirtual
AtomID typedefcore::scoring::constraints::Constraint
choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &)core::scoring::constraints::Constraintinlinevirtual
clone() const protocols::constraints_additional::SequenceCoupling1BDConstraintvirtual
core::scoring::constraints::Constraint::clone(FuncOP) const core::scoring::constraints::Constraintinlinevirtual
Conformation typedefprotocols::constraints_additional::SequenceCoupling1BDConstraint
Constraint(ScoreType const &t)core::scoring::constraints::Constraintinline
ConstraintOP typedefprotocols::constraints_additional::SequenceCoupling1BDConstraint
dist(core::pose::Pose const &) const core::scoring::constraints::Constraintinlinevirtual
dist(XYZ_Func const &) const core::scoring::constraints::Constraintinlinevirtual
effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const core::scoring::constraints::Constraintinlinevirtual
EnergyMap typedefprotocols::constraints_additional::SequenceCoupling1BDConstraint
fill_f1_f2(AtomID const &, XYZ_Func const &, core::Vector &, core::Vector &, EnergyMap const &) const protocols::constraints_additional::SequenceCoupling1BDConstraintvirtual
FuncFactory typedefprotocols::constraints_additional::SequenceCoupling1BDConstraint
get_func() const core::scoring::constraints::Constraintinlinevirtual
natoms() const core::scoring::constraints::SequenceProfileConstraintinlinevirtual
operator!=(Constraint const &other) const core::scoring::constraints::Constraintinline
operator==(Constraint const &) const core::scoring::constraints::Constraintinlinevirtual
Pose typedefprotocols::constraints_additional::SequenceCoupling1BDConstraint
profile_mapping() const core::scoring::constraints::SequenceProfileConstraint
read_constraint(std::istream &, core::pose::Pose const &)core::scoring::constraints::Constraintinlinevirtual
read_data(std::istream &)core::scoring::constraints::Constraintinlinevirtual
read_def(std::istream &, Pose const &, FuncFactory const &)protocols::constraints_additional::SequenceCoupling1BDConstraintvirtual
remap_resid(SequenceMapping const &) const core::scoring::constraints::SequenceProfileConstraintvirtual
remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP map=NULL) const core::scoring::constraints::SequenceProfileConstraintvirtual
residues() const core::scoring::constraints::SequenceProfileConstraintvirtual
score(XYZ_Func const &, EnergyMap const &, EnergyMap &) const protocols::constraints_additional::SequenceCoupling1BDConstraintvirtual
core::scoring::constraints::Constraint::score(conformation::Conformation const &) const core::scoring::constraints::Constraintinlinevirtual
score_type() const core::scoring::constraints::Constraintinline
seqpos() const core::scoring::constraints::SequenceProfileConstraintinline
seqpos(core::Size seqpos)core::scoring::constraints::SequenceProfileConstraintinline
sequence_profile() const core::scoring::constraints::SequenceProfileConstraint
SequenceCoupling typedefprotocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceCoupling1BDConstraint()protocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceCoupling1BDConstraint(Pose const &, core::Size, SequenceProfileCOP profile)protocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceCoupling1BDConstraint(core::Size, SequenceProfileCOP profile)protocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceCouplingCOP typedefprotocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceMapping typedefprotocols::constraints_additional::SequenceCoupling1BDConstraint
SequenceProfile typedefcore::scoring::constraints::SequenceProfileConstraint
SequenceProfileConstraint()core::scoring::constraints::SequenceProfileConstraint
SequenceProfileConstraint(Pose const &, core::Size, SequenceProfileCOP profile=NULL, core::id::SequenceMappingCOP mapping=NULL)core::scoring::constraints::SequenceProfileConstraint
SequenceProfileConstraint(core::Size, SequenceProfileCOP profile=NULL, core::id::SequenceMappingCOP mapping=NULL)core::scoring::constraints::SequenceProfileConstraint
SequenceProfileCOP typedefcore::scoring::constraints::SequenceProfileConstraint
set_sequence_profile(SequenceProfileCOP profile, core::id::SequenceMappingCOP mapping=NULL)core::scoring::constraints::SequenceProfileConstraint
setup_for_derivatives(XYZ_Func const &, ScoreFunction const &) const core::scoring::constraints::Constraintinlinevirtual
setup_for_scoring(XYZ_Func const &, ScoreFunction const &) const core::scoring::constraints::Constraintinlinevirtual
show(std::ostream &out) const protocols::constraints_additional::SequenceCoupling1BDConstraintvirtual
show_def(std::ostream &, Pose const &) const core::scoring::constraints::SequenceProfileConstraintvirtual
show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const core::scoring::constraints::Constraintvirtual
steal_def(pose::Pose const &)core::scoring::constraints::Constraintinlinevirtual
to_string() const core::scoring::constraints::Constraintinline
type() const protocols::constraints_additional::SequenceCoupling1BDConstraintinlinevirtual
weight(core::Real const w)core::scoring::constraints::SequenceProfileConstraint
weight() const core::scoring::constraints::SequenceProfileConstraint
XYZ_Func typedefprotocols::constraints_additional::SequenceCoupling1BDConstraint
~Constraint()core::scoring::constraints::Constraintvirtual
~SequenceCoupling1BDConstraint()protocols::constraints_additional::SequenceCoupling1BDConstraintvirtual
~SequenceProfileConstraint()core::scoring::constraints::SequenceProfileConstraintvirtual