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protocols::frag_picker::scores::ProfileScoreBlosum62 Member List

This is the complete list of members for protocols::frag_picker::scores::ProfileScoreBlosum62, including all inherited members.

blosum_matrix_protocols::frag_picker::scores::ProfileScoreBlosum62private
cached_score(FragmentCandidateOP, FragmentScoreMapOP)protocols::frag_picker::scores::ProfileScoreBlosum62virtual
cached_scores_id_protocols::frag_picker::scores::ProfileScoreBlosum62private
CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)protocols::frag_picker::scores::CachingScoringMethodinline
clean_up()protocols::frag_picker::scores::ProfileScoreBlosum62inlinevirtual
clear()protocols::frag_picker::scores::ProfileScoreBlosum62private
do_caching(VallChunkOP)protocols::frag_picker::scores::ProfileScoreBlosum62virtual
FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)protocols::frag_picker::scores::FragmentScoringMethodinline
get_id()protocols::frag_picker::scores::FragmentScoringMethodinline
get_min_allowed_score()protocols::frag_picker::scores::FragmentScoringMethodinline
get_priority()protocols::frag_picker::scores::FragmentScoringMethodinline
get_score_name()protocols::frag_picker::scores::FragmentScoringMethodinline
get_use_lowest()protocols::frag_picker::scores::FragmentScoringMethodinline
id_protocols::frag_picker::scores::FragmentScoringMethodprotected
lowest_acceptable_value_protocols::frag_picker::scores::FragmentScoringMethodprotected
name_protocols::frag_picker::scores::FragmentScoringMethodprotected
priority_protocols::frag_picker::scores::FragmentScoringMethodprotected
ProfileScoreBlosum62(Size priority, Real lowest_acceptable_value, bool use_lowest, sequence::SequenceProfileOP query_profile, Size longest_vall_chunk)protocols::frag_picker::scores::ProfileScoreBlosum62
query_profile_protocols::frag_picker::scores::ProfileScoreBlosum62private
score(FragmentCandidateOP, FragmentScoreMapOP)protocols::frag_picker::scores::ProfileScoreBlosum62virtual
scores_protocols::frag_picker::scores::ProfileScoreBlosum62protected
set_id(Size id)protocols::frag_picker::scores::FragmentScoringMethodinline
set_min_allowed_score(Real lowest_acceptable_value)protocols::frag_picker::scores::FragmentScoringMethodinline
use_lowest_protocols::frag_picker::scores::FragmentScoringMethodprotected
~ProfileScoreBlosum62()protocols::frag_picker::scores::ProfileScoreBlosum62