| aa_indices_from_submatrix_index(int submat_ind) const | core::pack::interaction_graph::DoubleLazyEdge | private |
| acknowledge_partial_state_change(int node_ind, int new_state, SparseMatrixIndex const &new_state_sparse_info) | core::pack::interaction_graph::DoubleLazyEdge | |
| acknowledge_state_change(int node_ind, int new_state, SparseMatrixIndex const &new_state_sparse_info, core::PackerEnergy &new_energy) | core::pack::interaction_graph::DoubleLazyEdge | |
| acknowledge_state_zeroed(int node_ind) | core::pack::interaction_graph::DoubleLazyEdge | |
| acknowledge_substitution(int substituted_node_index, core::PackerEnergy const curr_state_energy, int nodes_new_state, SparseMatrixIndex const &nodes_new_state_sparse_info) | core::pack::interaction_graph::DoubleLazyEdge | inline |
| actual_twobody_memory_use() const | core::pack::interaction_graph::DoubleLazyEdge | |
| build_sc_only_rotamer() | core::pack::interaction_graph::DoubleLazyEdge | inline |
| count_dynamic_memory() const | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| count_static_memory() const | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| curr_state_energy_ | core::pack::interaction_graph::DoubleLazyEdge | private |
| declare_energies_final() | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| declare_energies_final_no_deletion() | core::pack::interaction_graph::DoubleLazyEdge | inlineprotected |
| DoubleLazyEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::DoubleLazyEdge | |
| DoubleLazyEdge() | core::pack::interaction_graph::DoubleLazyEdge | private |
| DoubleLazyEdge(DoubleLazyEdge const &) | core::pack::interaction_graph::DoubleLazyEdge | private |
| drop_aa_submatrix(int submat_ind) const | core::pack::interaction_graph::DoubleLazyEdge | |
| edge_index_ | core::pack::interaction_graph::DoubleLazyEdge | private |
| edge_weight() const | core::pack::interaction_graph::EdgeBase | inline |
| edge_weight(Real) | core::pack::interaction_graph::EdgeBase | protected |
| EdgeBase(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::EdgeBase | |
| eval_type(int node_index) const | core::pack::interaction_graph::OnTheFlyEdge | inline |
| FixedBBEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::FixedBBEdge | inline |
| force_aa_neighbors(int node1aa, int node2aa) | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| force_all_aa_neighbors() | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| get_aa_submatrix_energies(int node1aa, int node2aa) const | core::pack::interaction_graph::DoubleLazyEdge | |
| get_current_two_body_energy() const | core::pack::interaction_graph::DoubleLazyEdge | |
| get_dlazy_ig_owner() const | core::pack::interaction_graph::DoubleLazyEdge | inlineprivate |
| get_dlazy_ig_owner() | core::pack::interaction_graph::DoubleLazyEdge | inlineprivate |
| get_dlazy_node(int index) const | core::pack::interaction_graph::DoubleLazyEdge | inlineprivate |
| get_dlazy_node(int index) | core::pack::interaction_graph::DoubleLazyEdge | inlineprivate |
| get_edges_position_in_nodes_edge_vector(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_energy_following_partial_state_assignment() | core::pack::interaction_graph::DoubleLazyEdge | |
| get_energy_for_state_pair(int nodes_states[2], SparseMatrixIndex sparse_matrix_indices[2]) | core::pack::interaction_graph::DoubleLazyEdge | private |
| get_first_node_ind() const | core::pack::interaction_graph::EdgeBase | |
| get_node(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_node(int index) | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_node_index(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_num_states_for_node(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_otf_node(int which_node) const | core::pack::interaction_graph::OnTheFlyEdge | inlineprotected |
| get_otf_node(int which_node) | core::pack::interaction_graph::OnTheFlyEdge | inlineprotected |
| get_other_ind(int callers_index) const | core::pack::interaction_graph::EdgeBase | |
| get_other_node(int callers_index) const | core::pack::interaction_graph::EdgeBase | |
| get_owner() const | core::pack::interaction_graph::EdgeBase | inline |
| get_owner() | core::pack::interaction_graph::EdgeBase | inline |
| get_proline_correction(int which_node, int state) const | core::pack::interaction_graph::OnTheFlyEdge | inlineprotected |
| get_proline_correction_for_node(int node_ind, int state) const | core::pack::interaction_graph::OnTheFlyEdge | inline |
| get_second_node_ind() const | core::pack::interaction_graph::EdgeBase | |
| get_sparse_aa_info(int node1aa, int node2aa) const | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| get_two_body_energy(int const node1state, int const node2state) const | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| get_two_body_energy_smi(int const node1state, int const node2state, SparseMatrixIndex const &node1info, SparseMatrixIndex const &node2info) const | core::pack::interaction_graph::DoubleLazyEdge | |
| get_two_body_table_size() const | core::pack::interaction_graph::DoubleLazyEdge | |
| long_range_interactions_exist() const | core::pack::interaction_graph::OnTheFlyEdge | inline |
| NOT_YET_COMPUTED_ENERGY | core::pack::interaction_graph::DoubleLazyEdge | static |
| note_long_range_interactions_exist() | core::pack::interaction_graph::OnTheFlyEdge | inline |
| note_short_range_interactions_exist() | core::pack::interaction_graph::OnTheFlyEdge | inline |
| OnTheFlyEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::OnTheFlyEdge | |
| operator=(DoubleLazyEdge const &) | core::pack::interaction_graph::DoubleLazyEdge | private |
| partial_state_assignment_ | core::pack::interaction_graph::DoubleLazyEdge | private |
| pd_edge_table_all_zeros() const | core::pack::interaction_graph::DoubleLazyEdge | inlineprotected |
| potential_twobody_memory_use() const | core::pack::interaction_graph::DoubleLazyEdge | |
| prep_aa_submatrix(int node1aa, int node2aa) const | core::pack::interaction_graph::DoubleLazyEdge | private |
| prepare_for_simulated_annealing() | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| prepare_for_simulated_annealing_no_deletion() | core::pack::interaction_graph::DoubleLazyEdge | inlineprotected |
| print_current_energy() const | core::pack::interaction_graph::DoubleLazyEdge | |
| ran_annealing_since_pair_energy_table_cleared_ | core::pack::interaction_graph::DoubleLazyEdge | private |
| read_aa_submatrix(SparseMatrixIndex node1info, SparseMatrixIndex node2info) const | core::pack::interaction_graph::DoubleLazyEdge | private |
| same_edge(int node1, int node2) const | core::pack::interaction_graph::EdgeBase | |
| set_aa_submatrix(SparseMatrixIndex node1info, SparseMatrixIndex node2info, core::PackerEnergy setting) const | core::pack::interaction_graph::DoubleLazyEdge | private |
| set_edge_index(int index) | core::pack::interaction_graph::DoubleLazyEdge | |
| set_edge_weight(Real weight) | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| set_pos_in_node_edgevector(int callers_index, int position) | core::pack::interaction_graph::EdgeBase | |
| set_pos_in_owners_list(std::list< EdgeBase * >::iterator edge_iterator) | core::pack::interaction_graph::EdgeBase | |
| set_ProCorrection_values(int node_not_necessarily_proline, int state, core::PackerEnergy bb_nonprobb_E, core::PackerEnergy bb_probb_E, core::PackerEnergy sc_nonprobb_E, core::PackerEnergy sc_probb_E) | core::pack::interaction_graph::OnTheFlyEdge | |
| set_sparse_aa_info(FArray2_bool const &) | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| core::pack::interaction_graph::OnTheFlyEdge::set_sparse_aa_info(ObjexxFCL::FArray2_bool const &sparse_conn_info)=0 | core::pack::interaction_graph::FixedBBEdge | pure virtual |
| short_range_interactions_exist() const | core::pack::interaction_graph::OnTheFlyEdge | inline |
| sparse_aa_neighbors_ | core::pack::interaction_graph::DoubleLazyEdge | private |
| submatrix_index(int nod1aa, int node2aa) const | core::pack::interaction_graph::DoubleLazyEdge | private |
| submatrix_size(int node1aa, int node2aa) const | core::pack::interaction_graph::DoubleLazyEdge | private |
| two_body_energies_ | core::pack::interaction_graph::DoubleLazyEdge | mutableprivate |
| which_node(int node_index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| wipe_two_body_energies_for_node_state(int node, int state) | core::pack::interaction_graph::DoubleLazyEdge | private |
| ~DoubleLazyEdge() | core::pack::interaction_graph::DoubleLazyEdge | virtual |
| ~EdgeBase() | core::pack::interaction_graph::EdgeBase | virtual |
| ~FixedBBEdge() | core::pack::interaction_graph::FixedBBEdge | inlinevirtual |
| ~OnTheFlyEdge() | core::pack::interaction_graph::OnTheFlyEdge | virtual |
1.8.4