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protocols::protein_interface_design::filters::StubScoreFilter Class Reference

#include <StubScoreFilterLoops.hh>

Inheritance diagram for protocols::protein_interface_design::filters::StubScoreFilter:
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Collaboration diagram for protocols::protein_interface_design::filters::StubScoreFilter:
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Public Member Functions

 StubScoreFilter ()
 default ctor More...
 
virtual bool apply (core::pose::Pose const &pose) const
 Constructor with a single target residue. More...
 
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
 
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
virtual
protocols::filters::FilterOP 
clone () const
 
virtual
protocols::filters::FilterOP 
fresh_instance () const
 
core::Real compute (core::pose::Pose const &pose) const
 
virtual ~StubScoreFilter ()
 
void stub_sets (utility::vector1< StubSetStubPos > const &stub_sets)
 
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
 StubScoreFilter ()
 default ctor More...
 
virtual bool apply (core::pose::Pose const &pose) const
 Constructor with a single target residue. More...
 
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
 
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
virtual
protocols::filters::FilterOP 
clone () const
 
virtual
protocols::filters::FilterOP 
fresh_instance () const
 
core::Real compute (core::pose::Pose const &pose) const
 
virtual ~StubScoreFilter ()
 
void stub_sets (utility::vector1< StubSetStubPos > const &stub_sets)
 
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Types

typedef protocols::filters::Filter parent
 
typedef std::pair
< protocols::hotspot_hashing::HotspotStubSetOP,
std::pair
< protocols::hotspot_hashing::HotspotStubOP,
core::Size > > 
StubSetStubPos
 
typedef protocols::filters::Filter parent
 
typedef std::pair
< protocols::hotspot_hashing::HotspotStubSetOP,
std::pair
< protocols::hotspot_hashing::HotspotStubOP,
core::Size > > 
StubSetStubPos
 

Private Attributes

utility::vector1< StubSetStubPosstub_sets_
 
core::Size host_chain_
 
core::Real cb_force_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::StubScoreFilter::StubScoreFilter ( )

default ctor

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::StubScoreFilter::~StubScoreFilter ( )
virtual
protocols::protein_interface_design::filters::StubScoreFilter::StubScoreFilter ( )

default ctor

virtual protocols::protein_interface_design::filters::StubScoreFilter::~StubScoreFilter ( )
virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::StubScoreFilter::apply ( core::pose::Pose const &  pose) const
virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute().

virtual bool protocols::protein_interface_design::filters::StubScoreFilter::apply ( core::pose::Pose const &  pose) const
virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::clone ( ) const
virtual
virtual protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::clone ( ) const
virtual
core::Real protocols::protein_interface_design::filters::StubScoreFilter::compute ( core::pose::Pose const &  pose) const
core::Real protocols::protein_interface_design::filters::StubScoreFilter::compute ( core::pose::Pose const &  pose) const
protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::fresh_instance ( ) const
virtual
virtual protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::fresh_instance ( ) const
virtual
void protocols::protein_interface_design::filters::StubScoreFilter::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap ,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual

Reimplemented from protocols::filters::Filter.

void protocols::protein_interface_design::filters::StubScoreFilter::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &  pose 
)
virtual
void protocols::protein_interface_design::filters::StubScoreFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute().

virtual void protocols::protein_interface_design::filters::StubScoreFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

virtual core::Real protocols::protein_interface_design::filters::StubScoreFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::StubScoreFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::protein_interface_design::filters::StubScoreFilter::stub_sets ( utility::vector1< StubSetStubPos > const &  stub_sets)
void protocols::protein_interface_design::filters::StubScoreFilter::stub_sets ( utility::vector1< StubSetStubPos > const &  stub_sets)

Member Data Documentation

core::Real protocols::protein_interface_design::filters::StubScoreFilter::cb_force_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::StubScoreFilter::host_chain_
private

Referenced by compute(), and parse_my_tag().

utility::vector1< StubSetStubPos > protocols::protein_interface_design::filters::StubScoreFilter::stub_sets_
private

Referenced by compute(), and parse_my_tag().


The documentation for this class was generated from the following files: