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protocols::abinitio::Template Member List

This is the complete list of members for protocols::abinitio::Template, including all inherited members.

_read_constraints(std::string const &cst_file) const protocols::abinitio::Templateprivate
AtomPairConstraintList typedefprotocols::abinitio::Template
constraints() const protocols::abinitio::Templateinline
cstfile_protocols::abinitio::Templateprivate
cstset_protocols::abinitio::Templatemutableprivate
cull_violators(NamedAtomPairConstraintList const &target_list, NamedAtomPairConstraintList &culled_list) const protocols::abinitio::Template
external_score() const protocols::abinitio::Templateinline
good_protocols::abinitio::Templateprivate
has_constraints() const protocols::abinitio::Templateinline
is_good() const protocols::abinitio::Templateinline
map2target(core::fragment::FrameList const &template_frames, core::fragment::FrameList &target_frames) const protocols::abinitio::Template
map2target(core::fragment::FrameList &) const protocols::abinitio::Template
map2target(NamedAtomPairConstraintList const &, NamedAtomPairConstraintList &) const protocols::abinitio::Template
map2template(core::fragment::FrameList const &target_frames, core::fragment::FrameList &template_frames) const protocols::abinitio::Template
map2template(core::fragment::FrameList &) const protocols::abinitio::Template
map2template(NamedAtomPairConstraintList const &, NamedAtomPairConstraintList &) const protocols::abinitio::Template
map_pairing(core::scoring::dssp::Pairing const &, core::scoring::dssp::Pairing &, core::sequence::DerivedSequenceMapping const &map) const protocols::abinitio::Templateprivate
map_pairings2target(core::scoring::dssp::PairingList const &in, core::scoring::dssp::PairingList &out) const protocols::abinitio::Template
map_pairings2template(core::scoring::dssp::PairingList const &in, core::scoring::dssp::PairingList &out) const protocols::abinitio::Template
mapping_protocols::abinitio::Templateprivate
name() const protocols::abinitio::Templateinline
name_protocols::abinitio::Templateprivate
NamedAtomPairConstraintList typedefprotocols::abinitio::Template
pick_large_frags(core::fragment::FragSet &frag_set, core::fragment::SingleResidueFragDataOP frag_type, core::Size ncopies=1) const protocols::abinitio::Template
pose_protocols::abinitio::Templateprivate
query_sequence() const protocols::abinitio::Templateinline
read_constraints(std::string const &cst_file)protocols::abinitio::Template
register_options()protocols::abinitio::Templatestatic
reverse_mapping_protocols::abinitio::Templateprivate
score_protocols::abinitio::Templateprivate
steal_frags(core::fragment::FrameList const &target_frames, core::fragment::FragSet &accumulator, Size ncopies=1) const protocols::abinitio::Template
strand_pairings() const protocols::abinitio::Templateinline
strand_pairings_protocols::abinitio::Templateprivate
Template(std::string const &name, core::pose::PoseCOP, core::sequence::DerivedSequenceMapping const &mapping)protocols::abinitio::Template
Template(std::string const &name, core::pose::PoseCOP, std::string const &map_file, int offset, core::Real score)protocols::abinitio::Template
topol_score_protocols::abinitio::Templateprivate
topology_score() const protocols::abinitio::Templateinline
topology_score(core::Real setting)protocols::abinitio::Templateinline
~Template()protocols::abinitio::Templatevirtual