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protocols::moves::Mover Class Referenceabstract

: A mover is an object that can apply a conformational change to a pose More...

#include <Mover.hh>

Inherits utility::pointer::ReferenceCount.

Inherited by protocols::abinitio::AbrelaxMover, protocols::abinitio::DomainAssembly, protocols::abinitio::FragmentSampler, protocols::abinitio::Protocol, protocols::abinitio::ResolutionSwitcher, protocols::analysis::InterfaceAnalyzerMover, protocols::analysis::LoopAnalyzerMover, protocols::analysis::PackStatMover, protocols::anchored_design::AnchoredDesignMover, protocols::anchored_design::AnchoredPerturbMover, protocols::anchored_design::AnchoredRefineMover, protocols::antibody2::AntibodyModelerProtocol, protocols::antibody2::CDRsMinPackMin, protocols::antibody2::CloseOneCDRLoop, protocols::antibody2::GraftCDRLoopsProtocol, protocols::antibody2::GraftOneCDRLoop, protocols::antibody2::H3CterInsert, protocols::antibody2::H3PerturbCCD, protocols::antibody2::H3RefineCCD, protocols::antibody2::LHRepulsiveRamp, protocols::antibody2::LHRepulsiveRampLegacy, protocols::antibody2::LHSnugFitLegacy, protocols::antibody2::ModelCDRH3, protocols::antibody2::RefineBetaBarrel, protocols::antibody2::RefineOneCDRLoop, protocols::antibody2::RefineOneCDRLoopCentroid, protocols::antibody2::SnugDockProtocol, protocols::antibody::AntibodyModeler, protocols::antibody::CDRH3Modeler, protocols::antibody::CloseOneMover, protocols::antibody::GraftMover, protocols::antibody::GraftOneMover, protocols::antibody::LoopRlxMover, protocols::canonical_sampling::CanonicalSamplingMover, protocols::canonical_sampling::MetropolisHastingsMover, protocols::canonical_sampling::ThermodynamicMover, protocols::canonical_sampling::ThermodynamicObserver, protocols::cluster::GatherPosesMover, protocols::coarse_rna::CoarseRNA_DeNovoProtocol, protocols::coarse_rna::CoarseRNA_LoopCloser, protocols::comparative_modeling::ExtraThreadingMover, protocols::comparative_modeling::LoopRelaxMover, protocols::comparative_modeling::LoopRelaxThreadingMover, protocols::comparative_modeling::MultiThreadingMover, protocols::comparative_modeling::RecoverSideChainsMover, protocols::comparative_modeling::StealLigandMover, protocols::comparative_modeling::StealSideChainsMover, protocols::comparative_modeling::ThreadingMover, protocols::contact_map::ContactMap, protocols::ddg::ddGMover, protocols::design_opt::GreedyOptMutationMover, protocols::design_opt::ParetoOptMutationMover, protocols::dna::SeparateDnaFromNonDna, protocols::docking::ConformerSwitchMover, protocols::docking::DockingHighRes, protocols::docking::DockingInitialPerturbation, protocols::docking::DockingLowRes, protocols::docking::DockingProtocol, protocols::docking::DockingSlideIntoContact, protocols::docking::DockMCMCycle, protocols::docking::DockSetupMover, protocols::docking::FaDockingSlideIntoContact, protocols::docking::TemperedDocking, protocols::domain_assembly::AddAssemblyConstraints, protocols::domain_assembly::AssembleLinkerMover, protocols::domain_assembly::CombineChainsMover, protocols::domain_assembly::PostDockAssemblyScorer, protocols::electron_density::SetupForDensityScoringMover, protocols::enzdes::AddOrRemoveMatchCsts, protocols::enzdes::EnzRepackMinimize, protocols::enzdes::ModifyStoredRBConfs, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::enzdes::RepackLigandSiteWithoutLigandMover, protocols::features::ReportToDB, protocols::fibril::SetupForFibrilMover, protocols::fldsgn::BluePrintBDR, protocols::fldsgn::CircularPermutation, protocols::fldsgn::MatchResiduesMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::flexpack::FlexPacker, protocols::flexpep_docking::FlexPepDockingAbInitio, protocols::flexpep_docking::FlexPepDockingLowRes, protocols::flexpep_docking::FlexPepDockingProtocol, protocols::floppy_tail::FloppyTailMover, protocols::flxbb::FlxbbDesign, protocols::flxbb::InterlockAroma, protocols::forge::components::BDR, protocols::forge::components::VarLengthBuild, protocols::forge::constraints::RemoveCsts, protocols::forge::remodel::RemodelAccumulator, protocols::forge::remodel::RemodelConstraintGenerator, protocols::forge::remodel::RemodelDesignMover, protocols::forge::remodel::RemodelLoopMover, protocols::forge::remodel::RemodelMover, protocols::frag_picker::nonlocal::NonlocalFrags, protocols::grafting::GraftMoverBase, protocols::hotspot_hashing::movers::PlaceProbeMover [virtual], protocols::hotspot_hashing::movers::PlaceSurfaceProbe [virtual], protocols::hybridization::CartesianHybridize, protocols::hybridization::CartesianSampler, protocols::hybridization::ChunkTrialMover, protocols::hybridization::DomainAssembly, protocols::hybridization::FoldTreeHybridize, protocols::hybridization::HybridizeProtocol, protocols::hybridization::InsertChunkMover, protocols::hybridization::WeightedFragmentSmoothTrialMover, protocols::hybridization::WeightedFragmentTrialMover, protocols::idealize::IdealizeMover, protocols::ligand_docking::AddHydrogen, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::CompoundTranslate, protocols::ligand_docking::FinalMinimizer, protocols::ligand_docking::GrowLigand, protocols::ligand_docking::HighResDocker, protocols::ligand_docking::InterfaceScoreCalculator, protocols::ligand_docking::LigandBaseProtocol [virtual], protocols::ligand_docking::LigandDesign, protocols::ligand_docking::MinimizeBackbone, protocols::ligand_docking::MinimizeLigand, protocols::ligand_docking::RandomConformerMover, protocols::ligand_docking::RandomConformers, protocols::ligand_docking::RigidSearchMover, protocols::ligand_docking::Rotate, protocols::ligand_docking::Rotates, protocols::ligand_docking::SlideTogether, protocols::ligand_docking::StartFrom, protocols::ligand_docking::TetherLigand, protocols::ligand_docking::Transform, protocols::ligand_docking::Translate, protocols::ligand_docking::UnconstrainedTorsionsMover, protocols::loop_build::LoopBuildMover, protocols::loophash::FastGapMover, protocols::loophash::LoopHashDiversifier, protocols::loophash::LoopHashLibrary, protocols::loophash::LoopHashMoverWrapper, protocols::loophash::LoopHashRelaxProtocol, protocols::loophash::Mover_LoopHashRefine, protocols::LoopRebuild, protocols::LoopRefine, protocols::loops::FoldTreeFromLoops, protocols::loops::loop_closure::ccd::CcdLoopClosureMover, protocols::loops::loop_closure::ccd::CcdMover, protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure, protocols::loops::loop_closure::kinematic_closure::KinematicMover, protocols::loops::loop_closure::kinematic_closure::KinematicWrapper, protocols::loops::loop_mover::LoopMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycle, protocols::match::MatcherMover, protocols::medal::MedalExchangeMover, protocols::medal::MedalMover, protocols::motifs::MotifDnaPacker, protocols::moves::CanonicalSamplingMover, protocols::moves::ChangeFoldTreeMover, protocols::moves::CompositionMover, protocols::moves::CyclicMover, protocols::moves::DsspMover, protocols::moves::FilterMover, protocols::moves::IfMover, protocols::moves::IteratedConvergenceMover, protocols::moves::JumpOutMover, protocols::moves::MCShowMover, protocols::moves::MonteCarloUtil, protocols::moves::MoverContainer, protocols::moves::NullMover, protocols::moves::PDBDumpMover, protocols::moves::ProfilerMover, protocols::moves::PyMolMover, protocols::moves::RampingMover, protocols::moves::RepeatMover, protocols::moves::StructureRestrictor, protocols::moves::TrialMover, protocols::moves::WhileMover, protocols::noesy_assign::DistanceScoreMover, protocols::nonlocal::BiasedFragmentMover, protocols::nonlocal::HelixRotate, protocols::nonlocal::SheetTranslate, protocols::nonlocal::SingleFragmentMover, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::protein_interface_design::movers::LoopLengthChange, protocols::protein_interface_design::movers::LoopOver, protocols::protein_interface_design::movers::MapHotspot, protocols::protein_interface_design::movers::NullDesignMover, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::protein_interface_design::movers::RandomMutation, protocols::protein_interface_design::movers::SetAtomTree, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::protein_interface_design::movers::SpinMover, protocols::protein_interface_design::movers::Splice, protocols::protein_interface_design::movers::SubroutineMover, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::protein_interface_design::movers::TryRotamers, protocols::protein_interface_design::movers::VLB, protocols::qsar::qsarMover, protocols::qsar::RenderGridsToKinemage, protocols::qsar::scoring_grid::GridInitMover, protocols::rbsegment_relax::AutoRBMover, protocols::rbsegment_relax::CCDMoveWrapper, protocols::rbsegment_relax::FragInsertAndAlignMover, protocols::rbsegment_relax::RBSegmentMover, protocols::rbsegment_relax::RBSegmentRelax, protocols::RBSegmentRelaxImpl, protocols::relax::RelaxProtocolBase, protocols::rigid::MembraneCenterPerturbationMover, protocols::rigid::MembraneNormalPerturbationMover, protocols::rigid::MovePoseToMembraneCenterMover, protocols::rigid::RigidBodyMotionMover, protocols::rigid::RollMover, protocols::rigid::RotateJumpAxisMover, protocols::rigid::WholeBodyRotationMover, protocols::rigid::WholeBodyTranslationMover, protocols::rna::MultipleDomainMover, protocols::rna::RNA_DeNovoProtocol, protocols::rna::RNA_FragmentMover, protocols::rna::RNA_HelixAssembler, protocols::rna::RNA_LoopCloser, protocols::rna::RNA_Minimizer, protocols::rna::RNA_Relaxer, protocols::rosetta_scripts::ParsedProtocol, protocols::rosetta_scripts::SavePoseMover, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::RotamerDump::RotamerDumpMover, protocols::seeded_abinitio::CAcstGenerator, protocols::seeded_abinitio::CloseFold, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::seeded_abinitio::GrowPeptides, protocols::seeded_abinitio::PlaceFragments, protocols::seeded_abinitio::SeedFoldTree, protocols::seeded_abinitio::SeedSetupMover, protocols::seeded_abinitio::SegmentHybridizer, protocols::seeded_abinitio::SwapSegment, protocols::simple_moves::AddCavitiesMover, protocols::simple_moves::AddConstraintsToCurrentConformationMover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockMoveRbJumpMover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockRbTrialMover, protocols::simple_moves::BBGaussianMover, protocols::simple_moves::carbohydrates::RingConformationMover, protocols::simple_moves::chiral::ChiralMover, protocols::simple_moves::ClearConstraintsMover, protocols::simple_moves::ConsensusDesignMover, protocols::simple_moves::ConstrainToIdealMover, protocols::simple_moves::ConstraintSetMover, protocols::simple_moves::CutChainMover, protocols::simple_moves::DesignRepackMover, protocols::simple_moves::DME_FilterMover, protocols::simple_moves::DumpPdb, protocols::simple_moves::ExtendedPoseMover, protocols::simple_moves::FavorSequenceProfile, protocols::simple_moves::ForceDisulfidesMover, protocols::simple_moves::FragmentMover, protocols::simple_moves::GenericMonteCarloMover, protocols::simple_moves::GreenPacker, protocols::simple_moves::hbs::HbsPatcher, protocols::simple_moves::HelicalPeptideLengthMover, protocols::simple_moves::LoadPDBMover, protocols::simple_moves::LoadUnboundRotMover, protocols::simple_moves::MakePolyXMover, protocols::simple_moves::MembraneTopology, protocols::simple_moves::MinMover, protocols::simple_moves::MinPackMover, protocols::simple_moves::MissingDensityToJumpMover, protocols::simple_moves::ModifyVariantTypeMover, protocols::simple_moves::MonteCarloRecover, protocols::simple_moves::MonteCarloTest, protocols::simple_moves::MutateResidue, protocols::simple_moves::O2M_MutateMover, protocols::simple_moves::oop::OopMover, protocols::simple_moves::oop::OopPatcher, protocols::simple_moves::oop::OopRandomPuckMover, protocols::simple_moves::oop::OopRandomSmallMover, protocols::simple_moves::PackRotamersMover, protocols::simple_moves::PDBReloadMover, protocols::simple_moves::PeptideStapleMover, protocols::simple_moves::ProlineFixMover, protocols::simple_moves::rational_mc::RationalMonteCarlo, protocols::simple_moves::RepackSidechainsMover, protocols::simple_moves::RepulsiveOnlyMover, protocols::simple_moves::ReturnSidechainMover, protocols::simple_moves::RotamerTrialsMinMover, protocols::simple_moves::RotamerTrialsMover, protocols::simple_moves::SaneMinMover, protocols::simple_moves::ScoreMover, protocols::simple_moves::SequenceProfileMover, protocols::simple_moves::SetTorsion, protocols::simple_moves::ShakeStructureMover, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::simple_moves::SuperimposeMover, protocols::simple_moves::SwitchChainOrderMover, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::simple_moves::symmetry::DetectSymmetry, protocols::simple_moves::symmetry::ExtractAsymmetricPoseMover, protocols::simple_moves::symmetry::ExtractAsymmetricUnitMover, protocols::simple_moves::symmetry::FaSymDockingSlideTogether, protocols::simple_moves::symmetry::SetupForSymmetryMover, protocols::simple_moves::symmetry::SetupNCSMover, protocols::simple_moves::symmetry::SymDockingInitialPerturbation, protocols::simple_moves::symmetry::SymDockingSlideIntoContact, protocols::simple_moves::symmetry::SymmetricRMSMover, protocols::simple_moves::TaskAwareMinMover, protocols::simple_moves::TorsionDOFMover, protocols::star::StarAbinitio, protocols::surface_docking::CentroidRelaxMover, protocols::surface_docking::FaSlideAwayFromSurface, protocols::surface_docking::FaSlideIntoSurface, protocols::surface_docking::FullatomRelaxMover, protocols::surface_docking::SlideIntoSurface, protocols::surface_docking::SurfaceDockingProtocol, protocols::surface_docking::SurfaceOrientMover, protocols::swa::monte_carlo::RNA_AddMover, protocols::swa::monte_carlo::RNA_AddOrDeleteMover, protocols::swa::monte_carlo::RNA_DeleteMover, protocols::swa::monte_carlo::RNA_O2StarMover, protocols::swa::monte_carlo::RNA_SWA_MonteCarloMover, protocols::swa::monte_carlo::RNA_TorsionMover, protocols::swa::protein::StepWiseProteinCCD_Closer, protocols::swa::protein::StepWiseProteinLoopBridger, protocols::swa::protein::StepWiseProteinPacker, protocols::swa::protein::StepWiseProteinPoseMinimizer, protocols::swa::protein::StepWiseProteinPoseSetup, protocols::swa::protein::StepWiseProteinResidueSampler, protocols::swa::protein::StepWiseProteinScreener, protocols::swa::rna::RNA_AnalyticLoopCloser, protocols::swa::rna::RNA_LoopCloseSampler, protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler, protocols::swa::rna::StepWiseRNA_Minimizer, protocols::swa::rna::StepWiseRNA_PoseSetup, protocols::swa::rna::StepWiseRNA_ResidueSampler, protocols::swa::StepWisePoseSetup, protocols::swa::StepWiseResidueSampler, protocols::swa::StepWiseScreener, protocols::symmetric_docking::SymDockBaseProtocol, protocols::symmetric_docking::SymDockingHiRes, protocols::symmetric_docking::SymDockingLowRes, protocols::symmetric_docking::SymDockProtocol, protocols::symmetric_docking::SymFoldandDockMoveRbJumpMover, protocols::symmetric_docking::SymFoldandDockRbTrialMover, protocols::symmetric_docking::SymFoldandDockSlideTrialMover, protocols::symmetric_docking::SymSidechainMinMover, protocols::toolbox::match_enzdes_util::AlignPoseToInvrotTreeMover, protocols::ub_e2c::ubi_e2c_modeler, and protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover.

Collaboration diagram for protocols::moves::Mover:
Collaboration graph
[legend]

Public Types

typedef utility::tag::TagPtr TagPtr
 
typedef core::pose::Pose Pose
 
typedef core::pose::PoseCOP PoseCOP
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef std::list< std::string > Strings
 

Public Member Functions

 Mover ()
 
virtual ~Mover ()
 
virtual MoverSP create ()
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void parse_state (SerializableState const &state)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)
 
virtual void save_state (SerializableState &state)
 
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 
 Mover (Mover const &other)
 
Moveroperator= (Mover const &other)
 assignment operator More...
 
virtual core::Real last_proposal_density_ratio ()
 
virtual void apply (Pose &)=0
 
std::string const & type () const
 
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
 
void set_current_tag (std::string const &new_tag)
 
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
 
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
 
PoseCOP get_input_pose () const
 
PoseCOP get_native_pose () const
 
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
 
void type (const std::string &type_in)
 
virtual MoverOP clone () const
 clone has to be overridden only if clone invocation is expected. More...
 
virtual void parse_my_tag (TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
 
virtual std::string get_name () const =0
 Each derived class must specify its name. The class name. More...
 
std::string get_type () const
 
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
 
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
 
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
 
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
 
virtual Stringsinfo ()
 non-const accessor More...
 
virtual Strings const & info () const
 const accessor More...
 
virtual bool reinitialize_for_each_job () const
 this function informs the job distributor (august 08 vintage) whether this object needs to be freshly regenerated on each use. More...
 
virtual bool reinitialize_for_new_input () const
 this function informs the job distributor (august 08 vintage) whether this object needs to be regenerated when the input pose is about to change (for example, if the mover has special code on the first apply() that is only valid for that one input pose). More...
 
virtual MoverOP fresh_instance () const
 this is like clone(), except it generates a new mover object freshly created with the default ctor. This function should be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage). More...
 
void set_current_job (protocols::jobdist::BasicJobCOP job)
 
jobdist::BasicJobCOP get_current_job () const
 

Static Public Member Functions

static std::string name ()
 
static void register_options ()
 overload this static method if you access options within the mover. these options will end up in -help of your application if users of this mover call register_options. do this recursively! if you use movers within your mover, call their register_options in your register_options() method. More...
 

Protected Member Functions

void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...
 

Private Attributes

std::string type_
 
std::string current_tag_
 
PoseCOP input_pose_
 
PoseCOP native_pose_
 
MoverStatus last_status_
 used to track if movers fail their filters - jobdist::BasicJob Distributor queries for this value More...
 
Strings info_
 miscellaneous info: optional notes about mover results. Fed to Job by JobDistributor (jd2), allowing JobOutputters to optionally report this information in some way. More...
 
jobdist::BasicJobCOP current_job_
 this field can be NULL or it refers to the current JOB this mover is working on. More...
 

Detailed Description

: A mover is an object that can apply a conformational change to a pose

Detailed::
Each derived class should define its own apply() statement DO NOT JUST GO ADDING FUNCTIONS TO THIS CLASS. YOU IMPLY EVERYONE WHO DERIVES FROM IT IS OBLIGATED TO IMPLEMENT THAT FUNCTION, OR, IF THEY DON'T, THAT THEY ARE IMPLICTLY AGREEING THAT THE BASE CLASS IMPLEMENTATION IS CORRECT.
Authors
Monica Berrondo, Jeff Gray, Steven Lewis, Sarel Fleishman
Last Modified:

Member Typedef Documentation

typedef std::list< std::string > protocols::moves::Mover::Strings
typedef utility::tag::TagPtr protocols::moves::Mover::TagPtr

Constructor & Destructor Documentation

protocols::moves::Mover::Mover ( )
protocols::moves::Mover::~Mover ( )
virtual
protocols::moves::Mover::Mover ( std::string const &  type_name)

sets the type for a mover; name_ has been removed (2010/05/14)

protocols::moves::Mover::Mover ( Mover const &  other)

Member Function Documentation

void protocols::moves::Mover::apply ( core::io::serialization::PipeMap pmap)
virtual
virtual void protocols::moves::Mover::apply ( Pose )
pure virtual

Implemented in protocols::abinitio::Stage1Sampler, protocols::rigid::RigidBodyDofSeqPerturbMover, protocols::rigid::RigidBodyDofPerturbMover, protocols::rigid::RigidBodyDofRandomTransMover, protocols::rigid::RigidBodyDofSeqTransMover, protocols::rigid::RigidBodyDofTransMover, protocols::rigid::RigidBodyDofSeqRandomizeMover, protocols::forge::components::VarLengthBuild, protocols::rigid::RigidBodyDofRandomizeMover, protocols::rigid::UniformSphereTransMover, protocols::rigid::RigidBodyTransMover, protocols::rbsegment_relax::StrandTwistingMover, protocols::forge::remodel::RemodelLoopMover, protocols::rigid::RigidBodyDeterministicSpinMover, protocols::forge::remodel::RemodelMover, protocols::rigid::RigidBodySpinMover, protocols::forge::components::BDR, protocols::flxbb::FlxbbDesignPack, protocols::rbsegment_relax::GaussianRBSegmentMover, protocols::cluster::AssignToClustersMover, protocols::rigid::RigidBodyRandomizeMover, protocols::moves::PyMolMover, protocols::LoopRefine, protocols::anchored_design::AnchoredRefineMover, protocols::rbsegment_relax::SequenceShiftMover, protocols::rigid::RigidBodyPerturbNoCenterMover, protocols::moves::CycleMover, protocols::fldsgn::BluePrintBDR, protocols::enzdes::RepackLigandSiteWithoutLigandMover, protocols::simple_moves::GreenPacker, protocols::antibody::LoopRlxMover, protocols::rbsegment_relax::HelicalGaussianMover, protocols::abinitio::JumpingFoldConstraintsWrapper, protocols::canonical_sampling::MetricRecorder, protocols::enzdes::DiversifyStoredRBConfs, protocols::simple_moves::MinMover, protocols::moves::RandomMover, protocols::anchored_design::AnchoredPerturbMover, protocols::rigid::RigidBodyPerturbMover, protocols::docking::FaDockingSlideIntoContact, protocols::simple_moves::EnergyCutRotamerTrialsMinMover, protocols::moves::RampingMover, protocols::simple_moves::EnergyCutRotamerTrialsMover, protocols::antibody::CloseOneMover, protocols::enzdes::MinimizeStoredRBConfs, protocols::abinitio::ClassicAbinitio, protocols::moves::SequenceMover, protocols::simple_moves::ClassicFragmentMover, protocols::docking::DockingProtocol, protocols::simple_moves::BBG8T3AMover, protocols::enzdes::PredesignPerturbMover, protocols::abinitio::MembraneAbinitio, protocols::features::ReportToDB, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::moves::TrialMover, protocols::docking::DockingSlideIntoContact, protocols::enzdes::ApplyRandomStoredRBConf, protocols::loops::loop_closure::ccd::CcdMover, protocols::abinitio::FragmentSampler, protocols::grafting::AnchoredGraftMover, protocols::flxbb::FlxbbDesign, protocols::hybridization::FoldTreeHybridize, protocols::fldsgn::CircularPermutation, protocols::simple_moves::GenericMonteCarloMover, protocols::antibody::GraftOneMover, protocols::relax::FastRelax, protocols::symmetric_docking::SymDockProtocol, protocols::simple_moves::symmetry::FaSymDockingSlideTogether, protocols::canonical_sampling::TrajectoryRecorder, protocols::enzdes::GenerateStoredRBConfs, protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover, protocols::abinitio::ConstraintFragmentSampler, protocols::abinitio::FoldConstraints, protocols::ddg::ddGMover, protocols::loops::loop_closure::kinematic_closure::KinematicMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::surface_docking::FaSlideAwayFromSurface, protocols::comparative_modeling::ThreadingMover, protocols::docking::DockingHighRes, protocols::moves::MCShowMover, protocols::simple_moves::sidechain_moves::SidechainMoverBase, protocols::relax::CentroidRelax, protocols::simple_moves::sidechain_moves::SidechainMover, protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure, protocols::simple_moves::PackRotamersMover, protocols::idealize::IdealizeMover, protocols::protein_interface_design::movers::Splice, protocols::comparative_modeling::LoopRelaxMover, protocols::simple_moves::symmetry::ExtractAsymmetricPoseMover, protocols::abinitio::Protocol, protocols::docking::TemperedDocking, protocols::docking::InterfaceSidechainMinMover, protocols::rigid::RigidBodyMover, protocols::antibody::CDRH3Modeler, protocols::backrub::BackrubSidechainMover, protocols::ligand_docking::LigandBaseProtocol, protocols::symmetric_docking::SymDockingHiRes, protocols::docking::DockMCMCycle, protocols::simple_moves::symmetry::SymDockingSlideIntoContact, protocols::ligand_docking::LigandDockMain, protocols::rigid::WholeBodyRotationMover, protocols::symmetric_docking::SymInterfaceSidechainMinMover, protocols::nonlocal::SingleFragmentMover, protocols::abinitio::KinematicAbinitio, protocols::backrub::BackrubMover, protocols::canonical_sampling::CanonicalSamplingMover, protocols::ligand_docking::Rotate, protocols::comparative_modeling::MultiThreadingMover, protocols::docking::DockingLowRes, protocols::moves::ProfilerMover, protocols::relax::ClassicRelax, protocols::forge::remodel::RemodelDesignMover, protocols::simple_moves::sidechain_moves::SidechainMCMover, protocols::docking::DockingHighResLegacy, protocols::docking::DockMCMProtocol, protocols::simple_moves::carbohydrates::RingConformationMover, protocols::rbsegment_relax::CCDMoveWrapper, protocols::flxbb::InterlockAroma, protocols::simple_moves::RotamerTrialsMover, protocols::simple_moves::ShakeStructureMover, protocols::surface_docking::FaSlideIntoSurface, protocols::analysis::InterfaceAnalyzerMover, protocols::antibody::GraftMover, protocols::antibody2::RefineOneCDRLoop, protocols::hybridization::ChunkTrialMover, protocols::loops::loop_mover::refine::LoopMover_Refine_CCD, protocols::match::MatcherMover, protocols::moves::CanonicalSamplingMover, protocols::abinitio::JumpingFoldConstraints, protocols::abinitio::KinematicTaskControl, protocols::hybridization::HybridizeProtocol, protocols::simple_moves::RotamerTrialsMinMover, protocols::antibody2::LHRepulsiveRampLegacy, protocols::protein_interface_design::movers::PlaceStubMover, protocols::fldsgn::MatchResiduesMover, protocols::forge::remodel::RemodelAccumulator, protocols::loops::loop_closure::ccd::CcdLoopClosureMover, protocols::moves::MonteCarloUtil, protocols::docking::DockMinMover, protocols::loophash::LoopHashLibrary, protocols::rigid::WholeBodyTranslationMover, protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover, protocols::antibody2::H3RefineCCD, protocols::dna::DnaInterfacePacker, protocols::loops::loop_mover::LoopMover, protocols::forge::constraints::InvrotTreeRCG, protocols::simple_moves::ScoreMover, protocols::surface_docking::CentroidRelaxMover, protocols::ligand_docking::HighResDocker, protocols::ligand_docking::Translate, protocols::LoopRebuild, protocols::simple_moves::symmetry::ExtractAsymmetricUnitMover, protocols::surface_docking::FullatomRelaxMover, protocols::moves::StructureRestrictor, protocols::protein_interface_design::movers::TryRotamers, protocols::rbsegment_relax::RBSegmentMover, protocols::simple_moves::MinPackMover, protocols::simple_moves::BackboneMover, protocols::simple_moves::MonteCarloTest, protocols::hybridization::DomainAssembly, protocols::ligand_docking::Transform, protocols::rna::RNA_DeNovoProtocol, protocols::comparative_modeling::ExtraThreadingMover, protocols::ligand_docking::LigandDockProtocol, protocols::loops::loop_mover::refine::LoopMover_Refine_KIC, protocols::protein_interface_design::movers::LoopRemodel, protocols::flexpep_docking::FlexPepDockingProtocol, protocols::moves::MoverContainer, protocols::surface_docking::SurfaceDockingProtocol, protocols::hybridization::CartesianHybridize, protocols::protein_interface_design::movers::PlaceSimultaneouslyMover, protocols::simple_filters::EvaluatedTrialMover, protocols::simple_moves::MonteCarloRecover, protocols::simple_moves::symmetry::SymDockingInitialPerturbation, protocols::docking::DockingInitialPerturbation, protocols::docking::DockSetupMover, protocols::moves::RepeatMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycle, protocols::loops::loop_mover::refine::ShearMinCCDTrial, protocols::protein_interface_design::movers::LoopMoverFromCommandLine, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::docking::ConformerSwitchMover, protocols::hybridization::InsertChunkMover, protocols::rbsegment_relax::FragInsertAndAlignMover, protocols::simple_moves::DesignRepackMover, protocols::simple_moves::symmetry::SymMinMover, protocols::toolbox::match_enzdes_util::AlignPoseToInvrotTreeMover, protocols::docking::SidechainMinMover, protocols::loophash::LoopHashDiversifier, protocols::loops::loop_mover::refine::LoopMover_Refine_Backrub, protocols::moves::JumpOutMover, protocols::rbsegment_relax::RBSegmentRelax, protocols::simple_moves::ConsensusDesignMover, protocols::swa::StepWisePoseSetup, protocols::hybridization::CartesianSampler, protocols::nonlocal::BiasedFragmentMover, protocols::rigid::MembraneNormalPerturbationMover, protocols::swa::protein::StepWiseProteinResidueSampler, protocols::antibody2::H3PerturbCCD, protocols::antibody2::LHRepulsiveRamp, protocols::flexpep_docking::FlexPepDockingAbInitio, protocols::antibody2::LHSnugFitLegacy, protocols::antibody2::ModelCDRH3, protocols::antibody2::RefineOneCDRLoopCentroid, protocols::coarse_rna::CoarseRNA_DeNovoProtocol, protocols::ligand_docking::UnconstrainedTorsionsMover, protocols::loops::loop_closure::kinematic_closure::KinematicWrapper, protocols::loops::loop_mover::refine::SmallMinCCDTrial, protocols::moves::PDBDumpMover, protocols::simple_moves::DME_FilterMover, protocols::contact_map::ContactMap, protocols::enzdes::EnzRepackMinimize, protocols::hotspot_hashing::movers::PlaceProbeMover, protocols::ligand_docking::InterfaceScoreCalculator, protocols::loops::loop_mover::refine::RepackTrial, protocols::canonical_sampling::TemperatureController, protocols::design_opt::GreedyOptMutationMover, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::protein_interface_design::movers::DisulfideMover, protocols::simple_moves::ConstrainToIdealMover, protocols::simple_moves::MakePolyXMover, protocols::simple_moves::RepackSidechainsMover, protocols::swa::rna::StepWiseRNA_ResidueSampler, protocols::flexpep_docking::FlexPepDockingLowRes, protocols::floppy_tail::FloppyTailMover, protocols::moves::DsspMover, protocols::protein_interface_design::movers::LoopFinder, protocols::simple_moves::BBConRotMover, protocols::simple_moves::ddG, protocols::surface_docking::SlideIntoSurface, protocols::symmetric_docking::SymDockingLowRes, protocols::antibody2::SnugDock, protocols::canonical_sampling::MetropolisHastingsMover, protocols::docking::DockingPrepackProtocol, protocols::noesy_assign::DistanceScoreMover, protocols::rna::MultipleDomainMover, protocols::simple_moves::symmetry::SymRotamerTrialsMover, protocols::surface_docking::SurfaceOrientMover, protocols::antibody2::H3CterInsert, protocols::canonical_sampling::ParallelTempering, protocols::docking::DockingEnsemblePrepackProtocol, protocols::enzdes::AddOrRemoveMatchCsts, protocols::ligand_docking::StartFrom, protocols::moves::ChangeFoldTreeMover, protocols::protein_interface_design::movers::PlacementAuctionMover, protocols::simple_moves::SaneMinMover, protocols::simple_moves::symmetry::SetupNCSMover, protocols::simple_moves::TorsionDOFMover, protocols::symmetric_docking::SymFoldandDockRbTrialMover, protocols::symmetric_docking::SymSidechainMinMover, protocols::enzdes::EnzdesFlexBBProtocol, protocols::motifs::MotifDnaPacker, protocols::rna::RNA_Relaxer, protocols::simple_moves::AddCavitiesMover, protocols::simple_moves::MutateResidue, protocols::swa::rna::StepWiseRNA_Minimizer, protocols::antibody2::CDRsMinPackMin, protocols::canonical_sampling::HamiltonianExchange, protocols::design_opt::ParetoOptMutationMover, protocols::loophash::FastGapMover, protocols::moves::FilterMover, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::protein_interface_design::movers::RepackMinimize, protocols::protein_interface_design::movers::SaveAndRetrieveSidechains, protocols::qsar::RenderGridsToKinemage, protocols::simple_moves::rational_mc::RationalMonteCarlo, protocols::simple_moves::ReturnSidechainMover, protocols::swa::rna::RNA_AnalyticLoopCloser, protocols::abinitio::AbrelaxMover, protocols::forge::constraints::RemoveCsts, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, protocols::protein_interface_design::movers::DesignMinimizeHbonds, protocols::rna::RNA_FragmentMover, protocols::analysis::LoopAnalyzerMover, protocols::antibody::AntibodyModeler, protocols::antibody2::AntibodyModelerProtocol, protocols::antibody2::RefineBetaBarrel, protocols::antibody2::SnugDockProtocol, protocols::canonical_sampling::SidechainMetropolisHastingsMover, protocols::enzdes::SecondaryMatchProtocol, protocols::forge::remodel::RemodelConstraintGenerator, protocols::loophash::Mover_LoopHashRefine, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::antibody2::GraftCDRLoopsProtocol, protocols::enzdes::ModifyStoredRBConfs, protocols::flexpack::FlexPacker, protocols::ligand_docking::Rotates, protocols::loops::loop_mover::IndependentLoopMover, protocols::moves::WhileMover, protocols::simple_moves::chiral::ChiralMover, protocols::simple_moves::FragmentMover, protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler, protocols::swa::rna::StepWiseRNA_PoseSetup, protocols::swa::StepWiseScreener, protocols::coarse_rna::CoarseRNA_LoopCloser, protocols::fibril::SetupForFibrilMover, protocols::ligand_docking::MinimizeBackbone, protocols::moves::IfMover, protocols::rigid::RollMover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockRbTrialMover, protocols::simple_moves::MembraneTopology, protocols::simple_moves::ModifyVariantTypeMover, protocols::swa::monte_carlo::RNA_SWA_MonteCarloMover, protocols::swa::protein::StepWiseProteinPacker, protocols::swa::protein::StepWiseProteinPoseSetup, protocols::swa::StepWiseResidueSampler, protocols::anchored_design::AnchoredDesignMover, protocols::comparative_modeling::PartialThreadingMover, protocols::moves::IteratedConvergenceMover, protocols::nonlocal::HelixRotate, protocols::rosetta_scripts::ParsedProtocol, protocols::simple_moves::TaskAwareMinMover, protocols::swa::protein::StepWiseProteinScreener, protocols::hybridization::WeightedFragmentSmoothTrialMover, protocols::ligand_docking::FinalMinimizer, protocols::loophash::LoopHashRelaxProtocol, protocols::protein_interface_design::movers::BackrubDDMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::rigid::MembraneCenterPerturbationMover, protocols::rna::RNA_HelixAssembler, protocols::simple_moves::RepulsiveOnlyMover, protocols::simple_moves::SetTorsion, protocols::swa::protein::StepWiseProteinLoopBridger, protocols::dna::DnaInterfaceMultiStateDesign, protocols::domain_assembly::AssembleLinkerMover, protocols::enzdes::EnzdesFixBBProtocol, protocols::nonlocal::SheetTranslate, protocols::rna::RNA_LoopCloser, protocols::simple_moves::ConstraintSetMover, protocols::simple_moves::FavorSequenceProfile, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::swa::monte_carlo::RNA_AddMover, protocols::swa::protein::StepWiseProteinPoseMinimizer, protocols::dna::DesignProteinBackboneAroundDNA, protocols::ligand_docking::SlideTogether, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::rigid::RotateJumpAxisMover, protocols::swa::monte_carlo::RNA_AddOrDeleteMover, protocols::swa::monte_carlo::RNA_O2StarMover, protocols::swa::protein::StepWiseProteinCCD_Closer, protocols::abinitio::ResolutionSwitcher, protocols::canonical_sampling::ThermodynamicObserver, protocols::dna::SeparateDnaFromNonDna, protocols::moves::CyclicMover, protocols::protein_interface_design::movers::PlacementMinimizationMover, protocols::simple_moves::MissingDensityToJumpMover, protocols::simple_moves::symmetry::SymmetricRMSMover, protocols::simple_moves::TailsScoreMover, protocols::symmetric_docking::SymFoldandDockSlideTrialMover, protocols::cluster::GatherPosesMover, protocols::ligand_docking::CompoundTranslate, protocols::ligand_docking::TetherLigand, protocols::protein_interface_design::movers::LoopOver, protocols::rna::RNA_Minimizer, protocols::simple_moves::HelicalPeptideLengthMover, protocols::swa::rna::RNA_LoopCloseSampler, protocols::abinitio::DomainAssembly, protocols::ub_e2c::ubi_e2c_modeler, protocols::canonical_sampling::SimulatedTempering, protocols::domain_assembly::PostDockAssemblyScorer, protocols::enzdes::BackboneSampler, protocols::ligand_docking::AddHydrogen, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::GrowLigand, protocols::medal::MedalMover, protocols::protein_interface_design::movers::MapHotspot, protocols::simple_moves::SetReturningPackRotamersMover, protocols::simple_moves::symmetry::SetupForSymmetryMover, protocols::swa::monte_carlo::RNA_TorsionMover, protocols::canonical_sampling::TemperingBase, protocols::ligand_docking::MinimizeLigand, protocols::ligand_docking::RandomConformers, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::protein_interface_design::movers::PlaceOnLoop, protocols::qsar::scoring_grid::GridInitMover, protocols::simple_moves::oop::OopRandomSmallMover, protocols::swa::monte_carlo::RNA_DeleteMover, protocols::antibody2::GraftOneCDRLoop, protocols::electron_density::SetupForDensityScoringMover, protocols::frag_picker::nonlocal::NonlocalFrags, protocols::ligand_docking::LigandDesign, protocols::ligand_docking::RigidSearchMover, protocols::loophash::LoopHashMoverWrapper, protocols::protein_interface_design::movers::VLB, protocols::rosetta_scripts::SavePoseMover, protocols::seeded_abinitio::SegmentHybridizer, protocols::simple_moves::ExtendedPoseMover, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::comparative_modeling::StealLigandMover, protocols::seeded_abinitio::SeedFoldTree, protocols::simple_moves::hbs::HbsPatcher, protocols::simple_moves::oop::OopPatcher, protocols::simple_moves::oop::OopRandomPuckMover, protocols::simple_moves::ProlineFixMover, protocols::symmetric_docking::SymDockBaseProtocol, protocols::protein_interface_design::movers::BuildAlaPose, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::protein_interface_design::movers::PrepackMover, protocols::protein_interface_design::movers::SpinMover, protocols::seeded_abinitio::CloseFold, protocols::simple_moves::PeptideStapleMover, protocols::symmetric_docking::SymFoldandDockMoveRbJumpMover, protocols::antibody2::CloseOneCDRLoop, protocols::dna::DnaInterfaceMinMover, protocols::domain_assembly::AddAssemblyConstraints, protocols::moves::CompositionMover, protocols::protein_interface_design::movers::SetAtomTree, protocols::seeded_abinitio::PlaceFragments, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockMoveRbJumpMover, protocols::simple_moves::PDBReloadMover, protocols::comparative_modeling::LoopRelaxThreadingMover, protocols::domain_assembly::CombineChainsMover, protocols::ligand_docking::RandomConformerMover, protocols::medal::MedalExchangeMover, protocols::moves::NullMover, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::protein_interface_design::movers::RandomMutation, protocols::rigid::RigidBodyMotionMover, protocols::simple_moves::O2M_MutateMover, protocols::simple_moves::oop::OopMover, protocols::simple_moves::symmetry::DetectSymmetry, protocols::hybridization::WeightedFragmentTrialMover, protocols::rigid::MovePoseToMembraneCenterMover, protocols::simple_moves::SuperimposeMover, protocols::simple_moves::SwitchChainOrderMover, protocols::star::StarAbinitio, protocols::analysis::PackStatMover, protocols::comparative_modeling::StealSideChainsMover, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::RotamerDump::RotamerDumpMover, protocols::seeded_abinitio::CAcstGenerator, protocols::seeded_abinitio::GrowPeptides, protocols::seeded_abinitio::SeedSetupMover, protocols::simple_moves::DumpPdb, protocols::simple_moves::LoadUnboundRotMover, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::protein_interface_design::movers::LoopLengthChange, protocols::qsar::qsarMover, protocols::relax::MiniRelax, protocols::simple_moves::ForceDisulfidesMover, protocols::simple_moves::LoadPDBMover, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::SubroutineMover, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::seeded_abinitio::SwapSegment, protocols::simple_moves::CutChainMover, protocols::comparative_modeling::RecoverSideChainsMover, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::rbsegment_relax::AutoRBMover, protocols::simple_moves::SequenceProfileMover, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::protein_interface_design::movers::NullDesignMover, protocols::loops::FoldTreeFromLoops, protocols::simple_moves::AddConstraintsToCurrentConformationMover, protocols::docking::stateless::SaneDockingProtocol, protocols::simple_moves::ClearConstraintsMover, protocols::loop_build::LoopBuildMover, and protocols::RBSegmentRelaxImpl.

virtual void protocols::moves::Mover::clear_info ( )
inlinevirtual

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

References info_.

MoverOP protocols::moves::Mover::clone ( ) const
virtual

clone has to be overridden only if clone invocation is expected.

clone is meant to return an OP'ed deep copy of this object. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function.

Reimplemented in protocols::rbsegment_relax::StrandTwistingMover, protocols::rbsegment_relax::GaussianRBSegmentMover, protocols::cluster::AssignToClustersMover, protocols::simple_moves::ShearMover, protocols::cluster::ClusterPhilStyle_Loop, protocols::rigid::RigidBodyPerturbNoCenterMover, protocols::cluster::ClusterPhilStyle, protocols::rbsegment_relax::SequenceShiftMover, protocols::moves::CycleMover, protocols::simple_moves::SmallMover, protocols::rbsegment_relax::HelicalGaussianMover, protocols::forge::remodel::ResidueVicinityRCG, protocols::abinitio::JumpingFoldConstraintsWrapper, protocols::comparative_modeling::LoopRelaxMover, protocols::moves::RandomMover, protocols::enzdes::PredesignPerturbMover, protocols::moves::RampingMover, protocols::abinitio::ClassicAbinitio, protocols::abinitio::MembraneAbinitio, protocols::moves::SequenceMover, protocols::canonical_sampling::FixedTemperatureController, protocols::abinitio::FragmentSampler, protocols::simple_moves::PackRotamersMover, protocols::forge::components::VarLengthBuild, protocols::forge::remodel::RemodelLoopMover, protocols::forge::remodel::RemodelMover, protocols::relax::FastRelax, protocols::symmetric_docking::SymDockProtocol, protocols::simple_moves::GenericMonteCarloMover, protocols::cluster::EnsembleConstraints_Simple, protocols::fldsgn::BluePrintBDR, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::forge::components::BDR, protocols::abinitio::ConstraintFragmentSampler, protocols::canonical_sampling::MetricRecorder, protocols::flxbb::FlxbbDesign, protocols::abinitio::FoldConstraints, protocols::docking::DockingInitialPerturbation, protocols::simple_moves::MinPackMover, protocols::simple_moves::RotamerTrialsMinMover, protocols::protein_interface_design::movers::Splice, protocols::docking::DockingProtocol, protocols::fldsgn::CircularPermutation, protocols::nonlocal::SingleFragmentMover, protocols::simple_moves::symmetry::ExtractAsymmetricPoseMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::simple_moves::MinMover, protocols::antibody2::RefineOneCDRLoop, protocols::moves::MonteCarloUtil, protocols::forge::constraints::InverseRotamersRCG, protocols::hybridization::HybridizeProtocol, protocols::protein_interface_design::movers::TryRotamers, protocols::abinitio::KinematicAbinitio, protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD, protocols::simple_moves::RepackSidechainsMover, protocols::hybridization::CartesianSampler, protocols::docking::DockMCMCycle, protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC, protocols::simple_moves::carbohydrates::RingConformationMover, protocols::simple_moves::sidechain_moves::SidechainMCMover, protocols::loophash::LoopHashLibrary, protocols::simple_moves::RotamerTrialsMover, protocols::docking::DockMCMProtocol, protocols::ligand_docking::Rotate, protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD, protocols::relax::ClassicRelax, protocols::docking::DockingLowRes, protocols::abinitio::JumpingFoldConstraints, protocols::loop_build::LoopMover_SlidingWindow, protocols::loophash::LoopHashDiversifier, protocols::dna::DnaInterfacePacker, protocols::loops::loop_mover::refine::ShearMinCCDTrial, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::fldsgn::SheetConstraintsRCG, protocols::forge::constraints::InvrotTreeRCG, protocols::simple_moves::symmetry::ExtractAsymmetricUnitMover, protocols::docking::DockingHighResLegacy, protocols::flxbb::InterlockAroma, protocols::simple_moves::ddG, protocols::symmetric_docking::SymDockingHiRes, protocols::analysis::InterfaceAnalyzerMover, protocols::forge::constraints::RemoveCsts, protocols::simple_moves::sidechain_moves::SidechainMover, protocols::canonical_sampling::PDBTrajectoryRecorder, protocols::features::ReportToDB, protocols::loops::loop_mover::refine::LoopMover_Refine_CCD, protocols::loops::loop_mover::refine::LoopMover_Refine_KIC, protocols::protein_interface_design::movers::LoopRemodel, protocols::rna::RNA_DeNovoProtocol, protocols::rosetta_scripts::ParsedProtocol, protocols::simple_moves::symmetry::SymMinMover, protocols::flexpep_docking::FlexPepDockingProtocol, protocols::simple_moves::ExtendedPoseMover, protocols::forge::constraints::NtoC_RCG, protocols::protein_interface_design::movers::PlaceStubMover, protocols::antibody2::H3RefineCCD, protocols::docking::DockingLowResEnsemble, protocols::forge::remodel::RemodelAccumulator, protocols::antibody2::LHRepulsiveRampLegacy, protocols::canonical_sampling::MetropolisHastingsMover, protocols::loops::loop_mover::refine::SmallMinCCDTrial, protocols::moves::IteratedConvergenceMover, protocols::protein_interface_design::movers::LoopMoverFromCommandLine, protocols::relax::CentroidRelax, protocols::simple_moves::MonteCarloTest, protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover, protocols::simple_moves::sidechain_moves::PerturbChiSidechainMover, protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover, protocols::canonical_sampling::ParallelTempering, protocols::dna::DnaInterfaceMultiStateDesign, protocols::fldsgn::MatchResiduesMover, protocols::hotspot_hashing::movers::PlaceSurfaceProbe, protocols::loops::loop_mover::refine::RepackTrial, protocols::match::MatcherMover, protocols::protein_interface_design::movers::PlaceSimultaneouslyMover, protocols::simple_moves::ConstrainToIdealMover, protocols::backrub::BackrubMover, protocols::enzdes::EnzRepackMinimize, protocols::forge::remodel::RemodelDesignMover, protocols::ligand_docking::HighResDocker, protocols::ligand_docking::Translate, protocols::LoopRebuild, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::canonical_sampling::HamiltonianExchange, protocols::canonical_sampling::SilentTrajectoryRecorder, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::protein_interface_design::movers::DisulfideMover, protocols::antibody2::SnugDock, protocols::design_opt::GreedyOptMutationMover, protocols::loops::loop_mover::refine::LoopMover_Refine_Backrub, protocols::simple_moves::ConsensusDesignMover, protocols::simple_moves::MonteCarloRecover, protocols::simple_moves::symmetry::SymPackRotamersMover, protocols::canonical_sampling::SidechainMetropolisHastingsMover, protocols::dna::DesignProteinBackboneAroundDNA, protocols::dna::SeparateDnaFromNonDna, protocols::docking::TemperedDocking, protocols::ligand_docking::Transform, protocols::protein_interface_design::movers::PlacementAuctionMover, protocols::backrub::BackrubSidechainMover, protocols::coarse_rna::CoarseRNA_DeNovoProtocol, protocols::rigid::RollMover, protocols::dna::DnaInterfaceMinMover, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::rbsegment_relax::FragInsertAndAlignMover, protocols::simple_moves::MutateResidue, protocols::docking::DockSetupMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, protocols::protein_interface_design::movers::LoopFinder, protocols::protein_interface_design::movers::RepackMinimize, protocols::protein_interface_design::movers::SaveAndRetrieveSidechains, protocols::antibody::AntibodyModeler, protocols::antibody2::H3PerturbCCD, protocols::antibody2::SnugDockProtocol, protocols::design_opt::ParetoOptMutationMover, protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves, protocols::nonlocal::HelixRotate, protocols::protein_interface_design::movers::DesignMinimizeHbonds, protocols::loophash::Mover_LoopHashRefine, protocols::protein_interface_design::movers::MapHotspot, protocols::simple_moves::symmetry::SetupNCSMover, protocols::anchored_design::AnchoredDesignMover, protocols::antibody2::LHSnugFitLegacy, protocols::idealize::IdealizeMover, protocols::nonlocal::SheetTranslate, protocols::simple_moves::MakePolyXMover, protocols::simple_moves::ModifyVariantTypeMover, protocols::simple_moves::TaskAwareMinMover, protocols::ligand_docking::MinimizeBackbone, protocols::loophash::LoopHashRelaxProtocol, protocols::motifs::MotifDnaPacker, protocols::moves::DsspMover, protocols::qsar::RenderGridsToKinemage, protocols::rna::MultipleDomainMover, protocols::simple_moves::MembraneTopology, protocols::simple_moves::ScoreMover, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::enzdes::AddOrRemoveMatchCsts, protocols::canonical_sampling::SimulatedTempering, protocols::contact_map::ContactMap, protocols::ligand_docking::FinalMinimizer, protocols::loophash::LoopHashMoverWrapper, protocols::moves::StructureRestrictor, protocols::protein_interface_design::movers::BackrubDDMover, protocols::simple_moves::ConstraintSetMover, protocols::simple_moves::SetTorsion, protocols::enzdes::BackboneSampler, protocols::ligand_docking::SlideTogether, protocols::moves::CyclicMover, protocols::protein_interface_design::movers::PlacementMinimizationMover, protocols::protein_interface_design::movers::SpinMover, protocols::seeded_abinitio::PlaceFragments, protocols::antibody2::LHRepulsiveRamp, protocols::frag_picker::nonlocal::NonlocalFrags, protocols::medal::MedalMover, protocols::simple_moves::DesignRepackMover, protocols::simple_moves::SaneMinMover, protocols::ub_e2c::ubi_e2c_modeler, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::symmetric_docking::SymDockingLowRes, protocols::antibody2::GraftCDRLoopsProtocol, protocols::canonical_sampling::TrialCounterObserver, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::GrowLigand, protocols::loophash::FastGapMover, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::simple_moves::HelicalPeptideLengthMover, protocols::simple_moves::SuperimposeMover, protocols::swa::rna::RNA_AnalyticLoopCloser, protocols::antibody2::AntibodyModelerProtocol, protocols::ligand_docking::InterfaceScoreCalculator, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::protein_interface_design::movers::PlaceOnLoop, protocols::rna::RNA_HelixAssembler, protocols::coarse_rna::CoarseRNA_LoopCloser, protocols::electron_density::SetupForDensityScoringMover, protocols::ligand_docking::LigandDesign, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::protein_interface_design::movers::VLB, protocols::rosetta_scripts::SavePoseMover, protocols::simple_moves::PDBReloadMover, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::moves::IfMover, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::seeded_abinitio::SeedFoldTree, protocols::seeded_abinitio::SegmentHybridizer, protocols::abinitio::DomainAssembly, protocols::protein_interface_design::movers::BuildAlaPose, protocols::rna::RNA_LoopCloser, protocols::seeded_abinitio::CloseFold, protocols::simple_moves::PeptideStapleMover, protocols::simple_moves::symmetry::DetectSymmetry, protocols::simple_moves::symmetry::SetupForSymmetryMover, protocols::ligand_docking::StartFrom, protocols::medal::MedalExchangeMover, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::protein_interface_design::movers::LoopOver, protocols::protein_interface_design::movers::SetAtomTree, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::simple_moves::SequenceProfileMover, protocols::ligand_docking::Rotates, protocols::moves::NullMover, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::RandomMutation, protocols::rna::RNA_Minimizer, protocols::simple_moves::ForceDisulfidesMover, protocols::simple_moves::LoadUnboundRotMover, protocols::simple_moves::SwitchChainOrderMover, protocols::star::StarAbinitio, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::seeded_abinitio::CAcstGenerator, protocols::seeded_abinitio::SeedSetupMover, protocols::simple_moves::CutChainMover, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::PrepackMover, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::seeded_abinitio::GrowPeptides, protocols::simple_moves::DumpPdb, protocols::simple_moves::FavorSequenceProfile, protocols::simple_moves::LoadPDBMover, protocols::protein_interface_design::movers::LoopLengthChange, protocols::seeded_abinitio::SwapSegment, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::protein_interface_design::movers::SubroutineMover, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::simple_moves::AddConstraintsToCurrentConformationMover, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::relax::MiniRelax, protocols::ligand_docking::CompoundTranslate, protocols::loops::FoldTreeFromLoops, protocols::qsar::scoring_grid::GridInitMover, protocols::ligand_docking::RandomConformers, protocols::simple_moves::ClearConstraintsMover, and protocols::protein_interface_design::movers::NullDesignMover.

Referenced by protocols::abinitio::ResolutionSwitcher::apply(), protocols::rbsegment_relax::RBSegmentRelax::apply(), protocols::enzdes::GenerateStoredRBConfs::apply(), protocols::enzdes::ApplyRandomStoredRBConf::apply(), protocols::enzdes::DiversifyStoredRBConfs::diversify_all_confs(), protocols::relax::RelaxProtocolBase::fresh_instance(), protocols::simple_moves::O2M_MutateMover::parse_def(), protocols::enzdes::MinimizeStoredRBConfs::rb_minimize_all_confs(), and protocols::simple_moves::symmetry::SymmetrySlider::very_far_away().

MoverSP protocols::moves::Mover::create ( )
virtual
MoverOP protocols::moves::Mover::fresh_instance ( ) const
virtual

this is like clone(), except it generates a new mover object freshly created with the default ctor. This function should be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage).

fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.

Reimplemented in protocols::forge::remodel::ResidueVicinityRCG, protocols::comparative_modeling::LoopRelaxMover, protocols::enzdes::PredesignPerturbMover, protocols::ligand_docking::LigandDockMain, protocols::forge::components::VarLengthBuild, protocols::simple_moves::PackRotamersMover, protocols::forge::remodel::RemodelLoopMover, protocols::forge::remodel::RemodelMover, protocols::simple_moves::GenericMonteCarloMover, protocols::fldsgn::BluePrintBDR, protocols::forge::components::BDR, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::flxbb::FlxbbDesign, protocols::canonical_sampling::MetricRecorder, protocols::simple_moves::MinPackMover, protocols::docking::DockingProtocol, protocols::protein_interface_design::movers::Splice, protocols::simple_moves::RotamerTrialsMinMover, protocols::fldsgn::CircularPermutation, protocols::nonlocal::SingleFragmentMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::simple_moves::MinMover, protocols::loophash::LoopHashLibrary, protocols::forge::constraints::InverseRotamersRCG, protocols::hybridization::HybridizeProtocol, protocols::protein_interface_design::movers::TryRotamers, protocols::hybridization::CartesianSampler, protocols::simple_moves::carbohydrates::RingConformationMover, protocols::simple_moves::RotamerTrialsMover, protocols::simple_moves::sidechain_moves::SidechainMCMover, protocols::simple_moves::RepackSidechainsMover, protocols::ligand_docking::Rotate, protocols::flxbb::InterlockAroma, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::loophash::LoopHashDiversifier, protocols::loops::loop_mover::refine::ShearMinCCDTrial, protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover, protocols::canonical_sampling::PDBTrajectoryRecorder, protocols::dna::DnaInterfacePacker, protocols::analysis::InterfaceAnalyzerMover, protocols::simple_moves::ExtendedPoseMover, protocols::fldsgn::SheetConstraintsRCG, protocols::forge::constraints::InvrotTreeRCG, protocols::protein_interface_design::movers::LoopRemodel, protocols::rosetta_scripts::ParsedProtocol, protocols::simple_moves::ddG, protocols::simple_moves::symmetry::SymMinMover, protocols::canonical_sampling::MetropolisHastingsMover, protocols::forge::remodel::RemodelAccumulator, protocols::match::MatcherMover, protocols::canonical_sampling::ParallelTempering, protocols::protein_interface_design::movers::PlaceStubMover, protocols::simple_moves::MonteCarloTest, protocols::features::ReportToDB, protocols::fldsgn::MatchResiduesMover, protocols::forge::constraints::RemoveCsts, protocols::canonical_sampling::HamiltonianExchange, protocols::forge::remodel::RemodelDesignMover, protocols::loops::loop_mover::refine::SmallMinCCDTrial, protocols::protein_interface_design::movers::LoopMoverFromCommandLine, protocols::loops::loop_mover::refine::RepackTrial, protocols::protein_interface_design::movers::DisulfideMover, protocols::protein_interface_design::movers::PlaceSimultaneouslyMover, protocols::backrub::BackrubMover, protocols::canonical_sampling::SidechainMetropolisHastingsMover, protocols::canonical_sampling::SilentTrajectoryRecorder, protocols::enzdes::EnzRepackMinimize, protocols::forge::constraints::NtoC_RCG, protocols::ligand_docking::HighResDocker, protocols::ligand_docking::Translate, protocols::loophash::Mover_LoopHashRefine, protocols::simple_moves::MonteCarloRecover, protocols::backrub::BackrubSidechainMover, protocols::design_opt::GreedyOptMutationMover, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::floppy_tail::FloppyTailMover, protocols::forge::constraints::ConstraintFileRCG, protocols::simple_moves::ConstrainToIdealMover, protocols::abinitio::AbrelaxMover, protocols::antibody2::SnugDock, protocols::dna::DnaInterfaceMultiStateDesign, protocols::moves::IteratedConvergenceMover, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::simple_moves::ConsensusDesignMover, protocols::simple_moves::symmetry::SymPackRotamersMover, protocols::ligand_docking::Transform, protocols::protein_interface_design::movers::PlacementAuctionMover, protocols::simple_moves::MutateResidue, protocols::loophash::LoopHashRelaxProtocol, protocols::nonlocal::HelixRotate, protocols::design_opt::ParetoOptMutationMover, protocols::dna::DesignProteinBackboneAroundDNA, protocols::dna::SeparateDnaFromNonDna, protocols::idealize::IdealizeMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, protocols::protein_interface_design::movers::LoopFinder, protocols::protein_interface_design::movers::RepackMinimize, protocols::protein_interface_design::movers::SaveAndRetrieveSidechains, protocols::antibody2::SnugDockProtocol, protocols::nonlocal::SheetTranslate, protocols::protein_interface_design::movers::DesignMinimizeHbonds, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::simple_moves::MakePolyXMover, protocols::dna::DnaInterfaceMinMover, protocols::moves::DsspMover, protocols::protein_interface_design::movers::MapHotspot, protocols::rigid::RollMover, protocols::simple_moves::MembraneTopology, protocols::anchored_design::AnchoredDesignMover, protocols::canonical_sampling::SimulatedTempering, protocols::enzdes::AddOrRemoveMatchCsts, protocols::simple_moves::ModifyVariantTypeMover, protocols::ligand_docking::MinimizeBackbone, protocols::simple_moves::ScoreMover, protocols::simple_moves::SetTorsion, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::simple_moves::TaskAwareMinMover, protocols::contact_map::ContactMap, protocols::ligand_docking::FinalMinimizer, protocols::loophash::LoopHashMoverWrapper, protocols::motifs::MotifDnaPacker, protocols::protein_interface_design::movers::BackrubDDMover, protocols::relax::RelaxProtocolBase, protocols::simple_moves::ConstraintSetMover, protocols::enzdes::BackboneSampler, protocols::frag_picker::nonlocal::NonlocalFrags, protocols::ligand_docking::SlideTogether, protocols::loophash::FastGapMover, protocols::moves::CyclicMover, protocols::protein_interface_design::movers::PlacementMinimizationMover, protocols::protein_interface_design::movers::SpinMover, protocols::seeded_abinitio::PlaceFragments, protocols::medal::MedalMover, protocols::moves::StructureRestrictor, protocols::simple_moves::DesignRepackMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::GrowLigand, protocols::moves::IfMover, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::simple_moves::SuperimposeMover, protocols::ligand_docking::InterfaceScoreCalculator, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::protein_interface_design::movers::PlaceOnLoop, protocols::ligand_docking::LigandDesign, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::protein_interface_design::movers::VLB, protocols::rosetta_scripts::SavePoseMover, protocols::simple_moves::PDBReloadMover, protocols::medal::MedalExchangeMover, protocols::protein_interface_design::movers::LoopOver, protocols::seeded_abinitio::SeedFoldTree, protocols::seeded_abinitio::SegmentHybridizer, protocols::abinitio::DomainAssembly, protocols::protein_interface_design::movers::BuildAlaPose, protocols::seeded_abinitio::CloseFold, protocols::star::StarAbinitio, protocols::ligand_docking::StartFrom, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::protein_interface_design::movers::SetAtomTree, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::simple_moves::SequenceProfileMover, protocols::ligand_docking::Rotates, protocols::moves::NullMover, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::RandomMutation, protocols::simple_moves::DumpPdb, protocols::simple_moves::ForceDisulfidesMover, protocols::simple_moves::SwitchChainOrderMover, protocols::seeded_abinitio::CAcstGenerator, protocols::seeded_abinitio::SeedSetupMover, protocols::simple_moves::CutChainMover, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::PrepackMover, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::seeded_abinitio::GrowPeptides, protocols::simple_moves::FavorSequenceProfile, protocols::simple_moves::LoadPDBMover, protocols::simple_moves::LoadUnboundRotMover, protocols::protein_interface_design::movers::LoopLengthChange, protocols::seeded_abinitio::SwapSegment, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::protein_interface_design::movers::SubroutineMover, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::simple_moves::AddConstraintsToCurrentConformationMover, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::ligand_docking::CompoundTranslate, protocols::loops::FoldTreeFromLoops, protocols::qsar::scoring_grid::GridInitMover, protocols::ligand_docking::RandomConformers, protocols::protein_interface_design::movers::NullDesignMover, and protocols::simple_moves::ClearConstraintsMover.

Referenced by create().

core::pose::PoseOP protocols::moves::Mover::get_additional_output ( )
virtual

Mechanism by which a mover may return multiple output poses from a single input pose.

fpd

Mechanism by which a mover may return multiple output poses from a single input pose. After apply is called, calling this function will return subsequent output poses. NULL is returned if the mover has no more output poses remaining. The base class implementation returns NULL always; multi-output movers must override this. RosettaScripts uses this interface to produce a 'branched' protocol.

Reimplemented in protocols::moves::IfMover, protocols::rosetta_scripts::ParsedProtocol, and protocols::loophash::LoopHashMoverWrapper.

jobdist::BasicJobCOP protocols::moves::Mover::get_current_job ( ) const
std::string protocols::moves::Mover::get_current_tag ( ) const
inline

A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

References current_tag_.

Referenced by protocols::comparative_modeling::LoopRelaxThreadingMover::apply(), protocols::loops::loop_mover::IndependentLoopMover::apply(), protocols::abinitio::AbrelaxMover::apply(), protocols::relax::ClassicRelax::apply(), protocols::abinitio::KinematicAbinitio::apply(), protocols::comparative_modeling::LoopRelaxMover::apply(), protocols::abinitio::ConstraintFragmentSampler::apply(), protocols::relax::FastRelax::apply(), protocols::abinitio::FragmentSampler::apply(), protocols::abinitio::ClassicAbinitio::apply(), protocols::abinitio::MembraneAbinitio::checkpoint(), protocols::abinitio::FragmentSampler::checkpointed_cycle_block(), protocols::abinitio::FragmentSampler::do_stage3_cycles(), protocols::abinitio::ClassicAbinitio::do_stage3_cycles(), protocols::abinitio::FragmentSampler::do_stage4_cycles(), protocols::abinitio::ClassicAbinitio::do_stage4_cycles(), protocols::abinitio::KinematicAbinitio::dump_jump_log(), protocols::abinitio::AbrelaxApplication::fold(), protocols::loop_build::LoopMover_SlidingWindow::model_loop(), protocols::moves::operator<<(), protocols::abinitio::Protocol::output_debug_structure(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::output_debug_structure(), protocols::relax::RelaxProtocolBase::output_debug_structure(), protocols::abinitio::MembraneAbinitio::output_debug_structure(), protocols::abinitio::ClassicAbinitio::output_debug_structure(), protocols::abinitio::MembraneAbinitio::recover_checkpoint(), protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure::select_final_loop(), and protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::select_final_loop().

PoseCOP protocols::moves::Mover::get_input_pose ( ) const
MoverStatus protocols::moves::Mover::get_last_move_status ( ) const

end parser interface, start Job Distributor interface/////////////

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.

start Job Distributor interface//////////////////////////////////

used by job distributor to get status

References last_status_.

Referenced by protocols::loop_build::LoopBuildMover::apply(), protocols::protein_interface_design::movers::VLB::apply(), protocols::rosetta_scripts::ParsedProtocol::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), protocols::abinitio::KinematicAbinitio::apply(), protocols::abinitio::JumpingFoldConstraintsWrapper::apply(), protocols::forge::components::VarLengthBuild::apply(), protocols::protein_interface_design::movers::PlaceStubMover::final_cleanup(), protocols::abinitio::AbrelaxApplication::fold(), and protocols::protein_interface_design::movers::PlaceOnLoop::minimize_toward_stub().

virtual std::string protocols::moves::Mover::get_name ( ) const
pure virtual

Each derived class must specify its name. The class name.

Implemented in protocols::rigid::RigidBodyDofSeqPerturbMover, protocols::rigid::RigidBodyDofPerturbMover, protocols::rigid::RigidBodyDofRandomTransMover, protocols::rigid::RigidBodyDofSeqTransMover, protocols::rigid::RigidBodyDofTransMover, protocols::rigid::RigidBodyDofSeqRandomizeMover, protocols::forge::components::VarLengthBuild, protocols::rigid::RigidBodyDofRandomizeMover, protocols::rigid::UniformSphereTransMover, protocols::rigid::RigidBodyTransMover, protocols::rbsegment_relax::StrandTwistingMover, protocols::forge::remodel::RemodelLoopMover, protocols::rigid::RigidBodyDeterministicSpinMover, protocols::forge::remodel::RemodelMover, protocols::rigid::RigidBodySpinMover, protocols::forge::components::BDR, protocols::rbsegment_relax::GaussianRBSegmentMover, protocols::flxbb::FlxbbDesignPack, protocols::simple_moves::LoggedFragmentMover, protocols::cluster::AssignToClustersMover, protocols::rigid::RigidBodyRandomizeMover, protocols::simple_moves::ShearMover, protocols::moves::PyMolMover, protocols::LoopRefine, protocols::cluster::ClusterPhilStyle_Loop, protocols::anchored_design::AnchoredRefineMover, protocols::rbsegment_relax::SequenceShiftMover, protocols::cluster::ClusterPhilStyle, protocols::rigid::RigidBodyPerturbNoCenterMover, protocols::moves::CycleMover, protocols::simple_moves::SmallMover, protocols::fldsgn::BluePrintBDR, protocols::enzdes::RepackLigandSiteWithoutLigandMover, protocols::simple_moves::GreenPacker, protocols::antibody::LoopRlxMover, protocols::rbsegment_relax::HelicalGaussianMover, protocols::abinitio::JumpingFoldConstraintsWrapper, protocols::cluster::ClusterBase, protocols::enzdes::DiversifyStoredRBConfs, protocols::simple_moves::MinMover, protocols::forge::remodel::ResidueVicinityRCG, protocols::moves::RandomMover, protocols::anchored_design::AnchoredPerturbMover, protocols::rigid::RigidBodyPerturbMover, protocols::docking::FaDockingSlideIntoContact, protocols::simple_moves::EnergyCutRotamerTrialsMinMover, protocols::moves::RampingMover, protocols::simple_moves::EnergyCutRotamerTrialsMover, protocols::antibody::CloseOneMover, protocols::enzdes::MinimizeStoredRBConfs, protocols::abinitio::ClassicAbinitio, protocols::moves::SequenceMover, protocols::docking::DockingProtocol, protocols::enzdes::PredesignPerturbMover, protocols::simple_moves::ClassicFragmentMover, protocols::simple_moves::BBG8T3AMover, protocols::abinitio::MembraneAbinitio, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::moves::TrialMover, protocols::canonical_sampling::FixedTemperatureController, protocols::docking::DockingSlideIntoContact, protocols::enzdes::ApplyRandomStoredRBConf, protocols::loops::loop_closure::ccd::CcdMover, protocols::abinitio::FragmentSampler, protocols::flxbb::FlxbbDesign, protocols::hybridization::FoldTreeHybridize, protocols::fldsgn::CircularPermutation, protocols::ligand_docking::LigandDockMain, protocols::simple_moves::GenericMonteCarloMover, protocols::antibody::GraftOneMover, protocols::cluster::EnsembleConstraints_Simple, protocols::symmetric_docking::SymDockProtocol, protocols::simple_moves::symmetry::FaSymDockingSlideTogether, protocols::relax::FastRelax, protocols::enzdes::GenerateStoredRBConfs, protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover, protocols::canonical_sampling::MetricRecorder, protocols::abinitio::ConstraintFragmentSampler, protocols::abinitio::FoldConstraints, protocols::ddg::ddGMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::comparative_modeling::ThreadingMover, protocols::simple_moves::sidechain_moves::SidechainMover, protocols::surface_docking::FaSlideAwayFromSurface, protocols::simple_moves::sidechain_moves::SidechainMoverBase, protocols::simple_moves::symmetry::ExtractAsymmetricPoseMover, protocols::cluster::EnsembleConstraints, protocols::docking::DockingHighRes, protocols::docking::TemperedDocking, protocols::moves::MCShowMover, protocols::simple_moves::SmoothSymmetricFragmentMover, protocols::idealize::IdealizeMover, protocols::simple_moves::PackRotamersMover, protocols::protein_interface_design::movers::Splice, protocols::comparative_modeling::LoopRelaxMover, protocols::abinitio::Protocol, protocols::antibody2::GraftCDRLoopsProtocol, protocols::docking::InterfaceSidechainMinMover, protocols::rigid::RigidBodyMover, protocols::abinitio::LoopJumpFoldCst, protocols::antibody::CDRH3Modeler, protocols::ligand_docking::LigandBaseProtocol, protocols::symmetric_docking::SymDockingHiRes, protocols::docking::DockMCMCycle, protocols::simple_moves::symmetry::SymDockingSlideIntoContact, protocols::nonlocal::SingleFragmentMover, protocols::backrub::BackrubMover, protocols::rigid::WholeBodyRotationMover, protocols::simple_moves::ConsensusDesignMover, protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover, protocols::symmetric_docking::SymInterfaceSidechainMinMover, protocols::simple_moves::sidechain_moves::SidechainMCMover, protocols::abinitio::KinematicAbinitio, protocols::canonical_sampling::CanonicalSamplingMover, protocols::comparative_modeling::MultiThreadingMover, protocols::moves::MonteCarloUtil, protocols::docking::DockingLowRes, protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure, protocols::moves::ProfilerMover, protocols::rbsegment_relax::CCDMoveWrapper, protocols::relax::ClassicRelax, protocols::antibody2::RefineOneCDRLoop, protocols::forge::remodel::RemodelDesignMover, protocols::docking::DockingHighResLegacy, protocols::docking::DockMCMProtocol, protocols::flxbb::InterlockAroma, protocols::match::MatcherMover, protocols::loophash::LoopHashLibrary, protocols::simple_moves::RotamerTrialsMover, protocols::simple_moves::sidechain_moves::PerturbChiSidechainMover, protocols::simple_moves::ShakeStructureMover, protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover, protocols::surface_docking::FaSlideIntoSurface, protocols::analysis::InterfaceAnalyzerMover, protocols::antibody::GraftMover, protocols::hybridization::ChunkTrialMover, protocols::loops::loop_mover::refine::LoopMover_Refine_CCD, protocols::moves::CanonicalSamplingMover, protocols::simple_moves::symmetry::ExtractAsymmetricUnitMover, protocols::abinitio::DoubleLayerKinematicAbinitio, protocols::abinitio::KinematicTaskControl, protocols::antibody2::LHRepulsiveRampLegacy, protocols::forge::constraints::InverseRotamersRCG, protocols::hybridization::HybridizeProtocol, protocols::simple_moves::RotamerTrialsMinMover, protocols::simple_moves::SmoothFragmentMover, protocols::hybridization::CartesianHybridize, protocols::protein_interface_design::movers::PlaceStubMover, protocols::docking::DockMinMover, protocols::forge::remodel::RemodelAccumulator, protocols::loops::loop_closure::ccd::CcdLoopClosureMover, protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover, protocols::antibody2::H3RefineCCD, protocols::grafting::GraftMoverBase, protocols::ligand_docking::Rotate, protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure, protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure, protocols::rigid::WholeBodyTranslationMover, protocols::simple_moves::carbohydrates::RingConformationMover, protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD, protocols::surface_docking::CentroidRelaxMover, protocols::canonical_sampling::PDBTrajectoryRecorder, protocols::hybridization::DomainAssembly, protocols::simple_moves::ScoreMover, protocols::surface_docking::FullatomRelaxMover, protocols::LoopRebuild, protocols::rbsegment_relax::RBSegmentMover, protocols::dna::DnaInterfacePacker, protocols::protein_interface_design::movers::TryRotamers, protocols::simple_moves::MinPackMover, protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD, protocols::rna::RNA_DeNovoProtocol, protocols::simple_moves::BackboneMover, protocols::simple_moves::ddG, protocols::comparative_modeling::ExtraThreadingMover, protocols::docking::ConformerSwitchMover, protocols::hybridization::CartesianSampler, protocols::docking::DockSetupMover, protocols::flexpep_docking::FlexPepDockingProtocol, protocols::ligand_docking::LigandDockProtocol, protocols::loops::loop_mover::refine::LoopMover_Refine_KIC, protocols::protein_interface_design::movers::LoopRemodel, protocols::surface_docking::SurfaceDockingProtocol, protocols::features::ReportToDB, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::simple_filters::EvaluatedTrialMover, protocols::simple_moves::WobbleMover, protocols::docking::DockingInitialPerturbation, protocols::fldsgn::MatchResiduesMover, protocols::loops::loop_mover::LoopMover, protocols::protein_interface_design::movers::PlaceSimultaneouslyMover, protocols::simple_moves::symmetry::SymDockingInitialPerturbation, protocols::moves::RepeatMover, protocols::simple_moves::MonteCarloTest, protocols::hybridization::InsertChunkMover, protocols::loop_build::LoopMover_SlidingWindow, protocols::loophash::LoopHashDiversifier, protocols::loops::loop_mover::refine::LoopRefineInnerCycle, protocols::loops::loop_mover::refine::ShearMinCCDTrial, protocols::protein_interface_design::movers::LoopMoverFromCommandLine, protocols::rbsegment_relax::FragInsertAndAlignMover, protocols::backrub::BackrubSidechainMover, protocols::fldsgn::SheetConstraintsRCG, protocols::forge::constraints::InvrotTreeRCG, protocols::noesy_assign::DistanceScoreMover, protocols::nonlocal::BiasedFragmentMover, protocols::simple_moves::DesignRepackMover, protocols::simple_moves::SymmetricFragmentMover, protocols::simple_moves::symmetry::SymMinMover, protocols::swa::StepWisePoseSetup, protocols::canonical_sampling::SilentTrajectoryRecorder, protocols::docking::SidechainMinMover, protocols::moves::JumpOutMover, protocols::rbsegment_relax::RBSegmentRelax, protocols::rigid::MembraneNormalPerturbationMover, protocols::simple_moves::oop::OopDPuckMinusMover, protocols::simple_moves::symmetry::SetupNCSMover, protocols::swa::protein::StepWiseProteinResidueSampler, protocols::antibody2::H3PerturbCCD, protocols::antibody2::LHRepulsiveRamp, protocols::flexpep_docking::FlexPepDockingAbInitio, protocols::ligand_docking::HighResDocker, protocols::ligand_docking::Translate, protocols::rigid::RigidBodyMotionMover, protocols::simple_moves::MonteCarloRecover, protocols::antibody2::LHSnugFitLegacy, protocols::antibody2::RefineOneCDRLoopCentroid, protocols::canonical_sampling::TemperatureController, protocols::coarse_rna::CoarseRNA_DeNovoProtocol, protocols::forge::constraints::RemoveCsts, protocols::simple_moves::DME_FilterMover, protocols::antibody2::ModelCDRH3, protocols::canonical_sampling::TrajectoryRecorder, protocols::contact_map::ContactMap, protocols::ligand_docking::UnconstrainedTorsionsMover, protocols::loops::loop_closure::kinematic_closure::KinematicWrapper, protocols::loops::loop_mover::refine::SmallMinCCDTrial, protocols::moves::PDBDumpMover, protocols::relax::CentroidRelax, protocols::canonical_sampling::MetropolisHastingsMover, protocols::design_opt::GreedyOptMutationMover, protocols::enzdes::EnzRepackMinimize, protocols::hotspot_hashing::movers::PlaceSurfaceProbe, protocols::ligand_docking::Transform, protocols::loops::loop_mover::refine::RepackTrial, protocols::swa::rna::StepWiseRNA_ResidueSampler, protocols::toolbox::match_enzdes_util::AlignPoseToInvrotTreeMover, protocols::canonical_sampling::ParallelTempering, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::flexpep_docking::FlexPepDockingLowRes, protocols::floppy_tail::FloppyTailMover, protocols::forge::constraints::NtoC_RCG, protocols::protein_interface_design::movers::DisulfideMover, protocols::simple_moves::ConstrainToIdealMover, protocols::simple_moves::MakePolyXMover, protocols::simple_moves::RepackSidechainsMover, protocols::surface_docking::SlideIntoSurface, protocols::symmetric_docking::SymDockingLowRes, protocols::coarse_rna::CoarseRNA_LoopCloser, protocols::docking::DockingPrepackProtocol, protocols::forge::constraints::ConstraintFileRCG, protocols::loophash::Mover_LoopHashRefine, protocols::moves::DsspMover, protocols::moves::IfMover, protocols::protein_interface_design::movers::LoopFinder, protocols::rna::MultipleDomainMover, protocols::simple_moves::BBConRotMover, protocols::surface_docking::SurfaceOrientMover, protocols::antibody2::SnugDock, protocols::canonical_sampling::HamiltonianExchange, protocols::docking::DockingEnsemblePrepackProtocol, protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC, protocols::simple_moves::AddCavitiesMover, protocols::simple_moves::SaneMinMover, protocols::simple_moves::symmetry::SymPackRotamersMover, protocols::simple_moves::symmetry::SymRotamerTrialsMover, protocols::antibody2::H3CterInsert, protocols::moves::ChangeFoldTreeMover, protocols::protein_interface_design::movers::PlacementAuctionMover, protocols::simple_moves::FragmentMover, protocols::simple_moves::rational_mc::RationalMonteCarlo, protocols::simple_moves::TorsionDOFMover, protocols::swa::rna::StepWiseRNA_Minimizer, protocols::symmetric_docking::SymFoldandDockRbTrialMover, protocols::symmetric_docking::SymSidechainMinMover, protocols::canonical_sampling::SidechainMetropolisHastingsMover, protocols::design_opt::ParetoOptMutationMover, protocols::enzdes::EnzdesFlexBBProtocol, protocols::loophash::FastGapMover, protocols::rna::RNA_Relaxer, protocols::simple_moves::MutateResidue, protocols::simple_moves::symmetry::SymShakeStructureMover, protocols::abinitio::AbrelaxMover, protocols::antibody2::CDRsMinPackMin, protocols::moves::FilterMover, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::protein_interface_design::movers::RepackMinimize, protocols::protein_interface_design::movers::SaveAndRetrieveSidechains, protocols::rna::RNA_FragmentMover, protocols::simple_moves::ReturnSidechainMover, protocols::analysis::LoopAnalyzerMover, protocols::antibody2::AntibodyModelerProtocol, protocols::enzdes::SecondaryMatchProtocol, protocols::ligand_docking::MinimizeBackbone, protocols::loophash::LoopHashRelaxProtocol, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, protocols::protein_interface_design::movers::DesignMinimizeHbonds, protocols::simple_moves::oop::OopDPuckPlusMover, protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler, protocols::antibody::AntibodyModeler, protocols::antibody2::RefineBetaBarrel, protocols::antibody2::SnugDockProtocol, protocols::enzdes::ModifyStoredRBConfs, protocols::flexpack::FlexPacker, protocols::motifs::MotifDnaPacker, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::qsar::RenderGridsToKinemage, protocols::swa::rna::StepWiseRNA_PoseSetup, protocols::enzdes::AddOrRemoveMatchCsts, protocols::ligand_docking::FinalMinimizer, protocols::loops::loop_mover::IndependentLoopMover, protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves, protocols::moves::StructureRestrictor, protocols::moves::WhileMover, protocols::nonlocal::HelixRotate, protocols::rigid::RollMover, protocols::simple_moves::chiral::ChiralMover, protocols::swa::protein::StepWiseProteinPacker, protocols::swa::protein::StepWiseProteinPoseSetup, protocols::swa::StepWiseResidueSampler, protocols::swa::StepWiseScreener, protocols::comparative_modeling::PartialThreadingMover, protocols::fibril::SetupForFibrilMover, protocols::loops::loop_closure::kinematic_closure::KinematicMover, protocols::rosetta_scripts::ParsedProtocol, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockRbTrialMover, protocols::simple_moves::MembraneTopology, protocols::simple_moves::ModifyVariantTypeMover, protocols::simple_moves::symmetry::SetupForSymmetryMover, protocols::swa::monte_carlo::RNA_SWA_MonteCarloMover, protocols::swa::protein::StepWiseProteinScreener, protocols::anchored_design::AnchoredDesignMover, protocols::ligand_docking::SlideTogether, protocols::moves::IteratedConvergenceMover, protocols::nonlocal::SheetTranslate, protocols::rigid::MembraneCenterPerturbationMover, protocols::simple_moves::TaskAwareMinMover, protocols::swa::protein::StepWiseProteinLoopBridger, protocols::hybridization::WeightedFragmentSmoothTrialMover, protocols::protein_interface_design::movers::BackrubDDMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::rna::RNA_HelixAssembler, protocols::simple_moves::RepulsiveOnlyMover, protocols::simple_moves::SetTorsion, protocols::swa::protein::StepWiseProteinPoseMinimizer, protocols::dna::DnaInterfaceMultiStateDesign, protocols::enzdes::EnzdesFixBBProtocol, protocols::rna::RNA_LoopCloser, protocols::simple_moves::ConstraintSetMover, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::swa::monte_carlo::RNA_AddMover, protocols::swa::protein::StepWiseProteinCCD_Closer, protocols::swa::rna::RNA_AnalyticLoopCloser, protocols::abinitio::ResolutionSwitcher, protocols::canonical_sampling::SimulatedTempering, protocols::dna::DesignProteinBackboneAroundDNA, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::GrowLigand, protocols::loops::loop_mover::refine::LoopMover_Refine_Backrub, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::rigid::RotateJumpAxisMover, protocols::swa::monte_carlo::RNA_AddOrDeleteMover, protocols::swa::monte_carlo::RNA_O2StarMover, protocols::swa::rna::RNA_LoopCloseSampler, protocols::canonical_sampling::TemperingBase, protocols::dna::SeparateDnaFromNonDna, protocols::enzdes::BackboneSampler, protocols::ligand_docking::InterfaceScoreCalculator, protocols::ligand_docking::TetherLigand, protocols::medal::MedalExchangeMover, protocols::medal::MedalMover, protocols::protein_interface_design::movers::PlacementMinimizationMover, protocols::rna::RNA_Minimizer, protocols::simple_moves::MissingDensityToJumpMover, protocols::simple_moves::symmetry::SymmetricRMSMover, protocols::simple_moves::TailsScoreMover, protocols::symmetric_docking::SymFoldandDockSlideTrialMover, protocols::cluster::GatherPosesMover, protocols::electron_density::SetupForDensityScoringMover, protocols::ligand_docking::LigandDesign, protocols::protein_interface_design::movers::LoopOver, protocols::star::StarAbinitio, protocols::abinitio::DomainAssembly, protocols::ub_e2c::ubi_e2c_modeler, protocols::enzdes::EnzdesBaseProtocol, protocols::frag_picker::nonlocal::NonlocalFrags, protocols::ligand_docking::AddHydrogen, protocols::ligand_docking::MinimizeLigand, protocols::loophash::LoopHashMoverWrapper, protocols::moves::CyclicMover, protocols::protein_interface_design::movers::MapHotspot, protocols::seeded_abinitio::SegmentHybridizer, protocols::simple_moves::ExtendedPoseMover, protocols::simple_moves::SetReturningPackRotamersMover, protocols::swa::monte_carlo::RNA_TorsionMover, protocols::antibody2::GraftOneCDRLoop, protocols::canonical_sampling::TrialCounterObserver, protocols::domain_assembly::AssembleLinkerMover, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::protein_interface_design::movers::PlaceOnLoop, protocols::simple_moves::oop::OopPuckMinusMover, protocols::simple_moves::oop::OopRandomSmallMover, protocols::swa::monte_carlo::RNA_DeleteMover, protocols::ligand_docking::RigidSearchMover, protocols::ligand_docking::StartFrom, protocols::protein_interface_design::movers::VLB, protocols::rosetta_scripts::SavePoseMover, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::comparative_modeling::StealLigandMover, protocols::ligand_docking::Rotates, protocols::qsar::qsarMover, protocols::seeded_abinitio::SeedFoldTree, protocols::simple_moves::hbs::HbsPatcher, protocols::simple_moves::oop::OopPatcher, protocols::simple_moves::oop::OopRandomPuckMover, protocols::simple_moves::ProlineFixMover, protocols::symmetric_docking::SymDockBaseProtocol, protocols::protein_interface_design::movers::BuildAlaPose, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::protein_interface_design::movers::PrepackMover, protocols::protein_interface_design::movers::SpinMover, protocols::seeded_abinitio::CloseFold, protocols::seeded_abinitio::PlaceFragments, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockMoveRbJumpMover, protocols::simple_moves::O2M_MutateMover, protocols::simple_moves::PeptideStapleMover, protocols::symmetric_docking::SymFoldandDockMoveRbJumpMover, protocols::antibody2::CloseOneCDRLoop, protocols::comparative_modeling::LoopRelaxThreadingMover, protocols::dna::DnaInterfaceMinMover, protocols::domain_assembly::PostDockAssemblyScorer, protocols::moves::CompositionMover, protocols::protein_interface_design::movers::SetAtomTree, protocols::rigid::MovePoseToMembraneCenterMover, protocols::simple_moves::PDBReloadMover, protocols::simple_moves::symmetry::DetectSymmetry, protocols::analysis::PackStatMover, protocols::ligand_docking::RandomConformerMover, protocols::moves::NullMover, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::protein_interface_design::movers::RandomMutation, protocols::simple_moves::oop::OopMover, protocols::hybridization::WeightedFragmentTrialMover, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::seeded_abinitio::CAcstGenerator, protocols::seeded_abinitio::SeedSetupMover, protocols::simple_moves::SuperimposeMover, protocols::simple_moves::SwitchChainOrderMover, protocols::comparative_modeling::StealSideChainsMover, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::RotamerDump::RotamerDumpMover, protocols::seeded_abinitio::GrowPeptides, protocols::simple_moves::DumpPdb, protocols::simple_moves::FavorSequenceProfile, protocols::simple_moves::LoadUnboundRotMover, protocols::protein_interface_design::movers::LoopLengthChange, protocols::rbsegment_relax::AutoRBMover, protocols::relax::MiniRelax, protocols::seeded_abinitio::SwapSegment, protocols::simple_moves::ForceDisulfidesMover, protocols::simple_moves::LoadPDBMover, protocols::domain_assembly::AddAssemblyConstraints, protocols::ligand_docking::CompoundTranslate, protocols::protein_interface_design::movers::SubroutineMover, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::simple_moves::CutChainMover, protocols::comparative_modeling::RecoverSideChainsMover, protocols::domain_assembly::CombineChainsMover, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::simple_moves::oop::OopPuckPlusMover, protocols::simple_moves::SequenceProfileMover, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::qsar::scoring_grid::GridInitMover, protocols::ligand_docking::RandomConformers, protocols::protein_interface_design::movers::NullDesignMover, protocols::loops::FoldTreeFromLoops, protocols::simple_moves::AddConstraintsToCurrentConformationMover, protocols::docking::stateless::SaneDockingProtocol, protocols::loop_build::LoopBuildMover, protocols::simple_moves::ClearConstraintsMover, and protocols::RBSegmentRelaxImpl.

Referenced by protocols::forge::remodel::RemodelConstraintGenerator::clear_stored_constraints(), protocols::moves::operator<<(), and protocols::forge::remodel::RemodelConstraintGenerator::parse_my_tag().

PoseCOP protocols::moves::Mover::get_native_pose ( ) const

References native_pose_.

Referenced by protocols::rna::RNA_DeNovoProtocol::add_number_native_base_pairs(), protocols::flexpep_docking::FlexPepDockingProtocol::addLowResStatistics(), protocols::rna::RNA_DeNovoProtocol::align_and_output_to_silent_file(), protocols::swa::StepWisePoseSetup::align_poses(), protocols::docking::stateless::SaneDockingProtocol::apply(), protocols::cluster::GatherPosesMover::apply(), protocols::swa::rna::RNA_LoopCloseSampler::apply(), protocols::simple_moves::symmetry::SymmetricRMSMover::apply(), protocols::swa::protein::StepWiseProteinPoseMinimizer::apply(), protocols::antibody2::GraftCDRLoopsProtocol::apply(), protocols::antibody2::AntibodyModelerProtocol::apply(), protocols::antibody::AntibodyModeler::apply(), protocols::antibody2::ModelCDRH3::apply(), protocols::coarse_rna::CoarseRNA_DeNovoProtocol::apply(), protocols::flexpep_docking::FlexPepDockingProtocol::apply(), protocols::loops::loop_mover::refine::LoopMover_Refine_KIC::apply(), protocols::rna::RNA_DeNovoProtocol::apply(), protocols::simple_moves::ScoreMover::apply(), protocols::antibody2::RefineOneCDRLoop::apply(), protocols::loops::loop_mover::refine::LoopMover_Refine_CCD::apply(), protocols::antibody::GraftMover::apply(), protocols::relax::ClassicRelax::apply(), protocols::symmetric_docking::SymDockProtocol::apply(), protocols::relax::FastRelax::apply(), protocols::docking::DockingProtocol::apply(), protocols::rosetta_scripts::ParsedProtocol::apply_mover_filter_pair(), protocols::relax::FastRelax::batch_apply(), protocols::symmetric_docking::SymDockProtocol::calc_rms(), protocols::rna::RNA_DeNovoProtocol::calc_rmsds(), protocols::relax::FastRelax::cmd_accept_to_best(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_five(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_four(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_one(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_three(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_two(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_zero(), protocols::abinitio::KinematicAbinitio::dump_jump_log(), protocols::enzdes::EnzdesBaseProtocol::enzdes_pack(), protocols::swa::StepWiseScreener::filter_and_output(), protocols::swa::protein::StepWiseProteinScreener::filter_and_output(), protocols::swa::StepWiseScreener::filter_native_BIG_BINS(), protocols::swa::protein::StepWiseProteinScreener::filter_native_BIG_BINS(), protocols::antibody2::GraftCDRLoopsProtocol::finalize_setup(), protocols::antibody2::AntibodyModelerProtocol::finalize_setup(), protocols::swa::rna::StepWiseRNA_ResidueSampler::floating_base_sampling(), protocols::swa::StepWisePoseSetup::initialize_pose_from_streams(), protocols::flexpep_docking::FlexPepDockingProtocol::markNativeInterface(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::swa::rna::StepWiseRNA_ResidueSampler::output_pose_data_list(), protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler::output_pose_data_list(), protocols::swa::rna::StepWiseRNA_Minimizer::output_pose_data_wrapper(), protocols::swa::monte_carlo::RNA_SWA_MonteCarloMover::output_silent_file(), protocols::rna::RNA_DeNovoProtocol::output_silent_struct(), protocols::coarse_rna::CoarseRNA_DeNovoProtocol::output_to_silent_file(), protocols::swa::rna::StepWiseRNA_Minimizer::pass_all_pose_screens(), protocols::swa::StepWiseScreener::prepare_ghost_pose(), protocols::swa::protein::StepWiseProteinScreener::prepare_ghost_pose(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::process_fragments(), protocols::swa::StepWiseResidueSampler::sample_residues(), protocols::swa::protein::StepWiseProteinPacker::sample_residues(), protocols::swa::protein::StepWiseProteinResidueSampler::sample_residues(), protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure::select_final_loop(), protocols::relax::RelaxProtocolBase::set_up_constraints(), protocols::swa::rna::StepWiseRNA_PoseSetup::setup_native_pose(), protocols::swa::StepWisePoseSetup::setup_working_native_pose(), protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler::standard_sampling(), protocols::swa::rna::StepWiseRNA_ResidueSampler::standard_sampling(), protocols::swa::rna::StepWiseRNA_ResidueSampler::standard_sampling_WRAPPER(), protocols::flexpep_docking::FlexPepDockingProtocol::storeJobStatistics(), and protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler::Update_pose_data_list().

std::string protocols::moves::Mover::get_type ( ) const
inline

References type_.

Referenced by protocols::moves::operator<<().

virtual Strings& protocols::moves::Mover::info ( )
inlinevirtual
virtual Strings const& protocols::moves::Mover::info ( ) const
inlinevirtual

const accessor

References info_.

virtual core::Real protocols::moves::Mover::last_proposal_density_ratio ( )
inlinevirtual
static std::string protocols::moves::Mover::name ( )
inlinestatic

Referenced by protocols::dna::DnaInterfaceMultiStateDesign::add_dna_states(), protocols::RBSegmentRelaxImpl::apply(), protocols::loop_build::LoopBuildMover::apply(), protocols::simple_moves::DumpPdb::apply(), protocols::protein_interface_design::movers::DisulfideMover::apply(), protocols::loops::loop_mover::refine::LoopMover_Refine_KIC::apply(), protocols::moves::StructureRestrictor::apply(), protocols::canonical_sampling::CanonicalSamplingMover::apply(), protocols::moves::PyMolMover::apply(), protocols::ligand_docking::HighResDocker::enable_ligand_rotamer_packing(), protocols::ligand_docking::LigandDesign::fragments_to_string(), protocols::ligand_docking::LigandDockMain::LigandDockMain(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::ligand_docking::LigandDockProtocol::optimize_orientation3(), protocols::protein_interface_design::movers::MapHotspot::output_pose(), protocols::simple_moves::FavorSequenceProfile::parse_def(), protocols::ligand_docking::CompoundTranslate::parse_my_tag(), protocols::ligand_docking::StartFrom::parse_my_tag(), protocols::simple_moves::FavorSequenceProfile::parse_my_tag(), protocols::ligand_docking::InterfaceScoreCalculator::parse_my_tag(), protocols::canonical_sampling::MetricRecorder::parse_my_tag(), protocols::moves::StructureRestrictor::pose_name(), protocols::hybridization::HybridizeProtocol::read_template_structures(), protocols::moves::PyMolMover::send_energy(), protocols::moves::PyMolMover::send_RAW_Energies(), and protocols::dna::DnaInterfacePacker::set_filename_root().

Mover & protocols::moves::Mover::operator= ( Mover const &  other)
void protocols::moves::Mover::parse_def ( utility::lua::LuaObject const &  def,
utility::lua::LuaObject const &  score_fxns,
utility::lua::LuaObject const &  tasks,
MoverCacheSP  cache 
)
virtual
void protocols::moves::Mover::parse_my_tag ( TagPtr const  tag,
DataMap data,
Filters_map const &  filters,
Movers_map const &  movers,
Pose const &  pose 
)
virtual

Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.

Some movers need not be parsed, so we shouldn't stop executions. This, however, calls attention to the lack of this method, which could be due to something as silly as a wrong parameters definition.

Reimplemented in protocols::forge::remodel::RemodelMover, protocols::forge::remodel::RemodelLoopMover, protocols::simple_moves::GenericMonteCarloMover, protocols::rigid::RigidBodyPerturbNoCenterMover, protocols::fldsgn::BluePrintBDR, protocols::docking::DockingProtocol, protocols::flxbb::FlxbbDesign, protocols::comparative_modeling::LoopRelaxMover, protocols::moves::RandomMover, protocols::forge::remodel::ResidueVicinityRCG, protocols::moves::TrialMover, protocols::enzdes::PredesignPerturbMover, protocols::moves::RampingMover, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::simple_moves::BackboneMover, protocols::fldsgn::CircularPermutation, protocols::docking::TemperedDocking, protocols::canonical_sampling::MetricRecorder, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::simple_moves::PackRotamersMover, protocols::features::ReportToDB, protocols::idealize::IdealizeMover, protocols::relax::FastRelax, protocols::nonlocal::SingleFragmentMover, protocols::protein_interface_design::movers::Splice, protocols::docking::DockingInitialPerturbation, protocols::simple_moves::symmetry::ExtractAsymmetricPoseMover, protocols::simple_moves::MinMover, protocols::simple_moves::RotamerTrialsMover, protocols::simple_moves::ConsensusDesignMover, protocols::simple_moves::RotamerTrialsMinMover, protocols::flxbb::InterlockAroma, protocols::hybridization::HybridizeProtocol, protocols::docking::DockSetupMover, protocols::protein_interface_design::movers::PlaceSimultaneouslyMover, protocols::simple_moves::sidechain_moves::SidechainMCMover, protocols::dna::DnaInterfacePacker, protocols::protein_interface_design::movers::PlaceStubMover, protocols::canonical_sampling::MetropolisHastingsMover, protocols::canonical_sampling::PDBTrajectoryRecorder, protocols::ligand_docking::Rotate, protocols::moves::MonteCarloUtil, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::loops::loop_mover::refine::LoopMover_Refine_CCD, protocols::simple_moves::MonteCarloTest, protocols::simple_moves::MinPackMover, protocols::protein_interface_design::movers::TryRotamers, protocols::simple_moves::MonteCarloRecover, protocols::simple_moves::symmetry::ExtractAsymmetricUnitMover, protocols::forge::constraints::InverseRotamersRCG, protocols::hybridization::CartesianSampler, protocols::analysis::InterfaceAnalyzerMover, protocols::flexpep_docking::FlexPepDockingProtocol, protocols::simple_moves::ExtendedPoseMover, protocols::simple_moves::sidechain_moves::SidechainMover, protocols::fldsgn::MatchResiduesMover, protocols::protein_interface_design::movers::LoopRemodel, protocols::canonical_sampling::ParallelTempering, protocols::match::MatcherMover, protocols::protein_interface_design::movers::PlacementAuctionMover, protocols::simple_moves::ddG, protocols::simple_moves::symmetry::SymMinMover, protocols::backrub::BackrubMover, protocols::backrub::BackrubSidechainMover, protocols::rosetta_scripts::ParsedProtocol, protocols::canonical_sampling::HamiltonianExchange, protocols::loophash::LoopHashDiversifier, protocols::protein_interface_design::movers::DisulfideMover, protocols::protein_interface_design::movers::LoopMoverFromCommandLine, protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover, protocols::simple_moves::sidechain_moves::PerturbChiSidechainMover, protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover, protocols::canonical_sampling::SidechainMetropolisHastingsMover, protocols::canonical_sampling::SilentTrajectoryRecorder, protocols::simple_moves::sidechain_moves::SidechainMoverBase, protocols::ligand_docking::HighResDocker, protocols::ligand_docking::Translate, protocols::simple_moves::symmetry::SymRotamerTrialsMover, protocols::hotspot_hashing::movers::PlaceSurfaceProbe, protocols::simple_moves::PackRotamersMoverLazy, protocols::canonical_sampling::TrajectoryRecorder, protocols::design_opt::GreedyOptMutationMover, protocols::enzdes::EnzRepackMinimize, protocols::simple_moves::MutateResidue, protocols::ligand_docking::Transform, protocols::simple_moves::RepackSidechainsMover, protocols::simple_moves::symmetry::SymPackRotamersMover, protocols::rigid::RollMover, protocols::simple_moves::MakePolyXMover, protocols::moves::DsspMover, protocols::moves::IfMover, protocols::protein_interface_design::movers::LoopFinder, protocols::design_opt::ParetoOptMutationMover, protocols::enzdes::BackboneSampler, protocols::fldsgn::SheetConstraintsRCG, protocols::forge::constraints::InvrotTreeRCG, protocols::simple_moves::MembraneTopology, protocols::canonical_sampling::SimulatedTempering, protocols::enzdes::AddOrRemoveMatchCsts, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::protein_interface_design::movers::RepackMinimize, protocols::protein_interface_design::movers::SaveAndRetrieveSidechains, protocols::simple_moves::symmetry::SetupNCSMover, protocols::moves::StructureRestrictor, protocols::protein_interface_design::movers::DesignMinimizeHbonds, protocols::simple_moves::SetTorsion, protocols::forge::constraints::RemoveCsts, protocols::ligand_docking::MinimizeBackbone, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::simple_moves::ScoreMover, protocols::simple_moves::TaskAwareMinMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::qsar::RenderGridsToKinemage, protocols::simple_moves::ModifyVariantTypeMover, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::dna::DnaInterfaceMultiStateDesign, protocols::forge::remodel::RemodelConstraintGenerator, protocols::ligand_docking::FinalMinimizer, protocols::protein_interface_design::movers::BackrubDDMover, protocols::simple_moves::ConstraintSetMover, protocols::comparative_modeling::PartialThreadingMover, protocols::contact_map::ContactMap, protocols::forge::constraints::NtoC_RCG, protocols::moves::IteratedConvergenceMover, protocols::forge::constraints::ConstraintFileRCG, protocols::ligand_docking::InterfaceScoreCalculator, protocols::ligand_docking::SlideTogether, protocols::seeded_abinitio::SeedFoldTree, protocols::electron_density::SetupForDensityScoringMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::canonical_sampling::TemperingBase, protocols::dna::DesignProteinBackboneAroundDNA, protocols::dna::SeparateDnaFromNonDna, protocols::protein_interface_design::movers::PlacementMinimizationMover, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::GrowLigand, protocols::protein_interface_design::movers::MapHotspot, protocols::simple_moves::DesignRepackMover, protocols::canonical_sampling::TrialCounterObserver, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::simple_moves::FavorSequenceProfile, protocols::dna::DnaInterfaceMinMover, protocols::ligand_docking::LigandDesign, protocols::rosetta_scripts::SavePoseMover, protocols::protein_interface_design::movers::LoopOver, protocols::protein_interface_design::movers::PlaceOnLoop, protocols::abinitio::DomainAssembly, protocols::loophash::LoopHashMoverWrapper, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::protein_interface_design::movers::VLB, protocols::seeded_abinitio::SegmentHybridizer, protocols::simple_moves::SwitchChainOrderMover, protocols::ligand_docking::StartFrom, protocols::seeded_abinitio::CloseFold, protocols::simple_moves::DumpPdb, protocols::simple_moves::symmetry::DetectSymmetry, protocols::simple_moves::symmetry::SetupForSymmetryMover, protocols::ligand_docking::Rotates, protocols::protein_interface_design::movers::BuildAlaPose, protocols::simple_moves::SuperimposeMover, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::protein_interface_design::movers::SetAtomTree, protocols::protein_interface_design::movers::SpinMover, protocols::seeded_abinitio::PlaceFragments, protocols::simple_moves::LoadUnboundRotMover, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::PrepackMover, protocols::protein_interface_design::movers::RandomMutation, protocols::seeded_abinitio::CAcstGenerator, protocols::seeded_abinitio::SeedSetupMover, protocols::simple_moves::O2M_MutateMover, protocols::simple_moves::PDBReloadMover, protocols::seeded_abinitio::GrowPeptides, protocols::simple_moves::LoadPDBMover, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::seeded_abinitio::SwapSegment, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::protein_interface_design::movers::LoopLengthChange, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::simple_moves::AddConstraintsToCurrentConformationMover, protocols::protein_interface_design::movers::SubroutineMover, protocols::simple_moves::ForceDisulfidesMover, protocols::ligand_docking::CompoundTranslate, protocols::simple_moves::CutChainMover, protocols::simple_moves::SequenceProfileMover, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::qsar::qsarMover, protocols::ligand_docking::RandomConformers, protocols::loops::FoldTreeFromLoops, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::qsar::scoring_grid::GridInitMover, and protocols::simple_moves::ClearConstraintsMover.

References protocols::moves::TR().

void protocols::moves::Mover::parse_state ( SerializableState const &  state)
virtual
static void protocols::moves::Mover::register_options ( )
inlinestatic
bool protocols::moves::Mover::reinitialize_for_each_job ( ) const
virtual
bool protocols::moves::Mover::reinitialize_for_new_input ( ) const
virtual
void protocols::moves::Mover::reset_status ( )

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

References last_status_, and protocols::moves::MS_SUCCESS.

Referenced by protocols::abinitio::Protocol::apply().

void protocols::moves::Mover::save_state ( SerializableState state)
virtual
void protocols::moves::Mover::set_current_job ( protocols::jobdist::BasicJobCOP  job)
void protocols::moves::Mover::set_current_tag ( std::string const &  new_tag)
inline
void protocols::moves::Mover::set_input_pose ( PoseCOP  pose)
virtual
void protocols::moves::Mover::set_last_move_status ( MoverStatus  status)
protected

nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says.

use this function for implementing filtering in your protocol - failed jobs should set the status to something other than "SUCCESS".

References last_status_.

Referenced by protocols::protein_interface_design::movers::DockAndRetrieveSidechains::apply(), protocols::protein_interface_design::movers::VLB::apply(), protocols::rosetta_scripts::SavePoseMover::apply(), protocols::loophash::LoopHashMoverWrapper::apply(), protocols::protein_interface_design::movers::PlaceOnLoop::apply(), protocols::protein_interface_design::movers::MapHotspot::apply(), protocols::protein_interface_design::movers::LoopOver::apply(), protocols::rosetta_scripts::ParsedProtocol::apply(), protocols::moves::IfMover::apply(), protocols::antibody2::AntibodyModelerProtocol::apply(), protocols::abinitio::AbrelaxMover::apply(), protocols::moves::FilterMover::apply(), protocols::protein_interface_design::movers::PlacementAuctionMover::apply(), protocols::floppy_tail::FloppyTailMover::apply(), protocols::loops::loop_closure::kinematic_closure::KinematicWrapper::apply(), protocols::loophash::LoopHashDiversifier::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), protocols::protein_interface_design::movers::TryRotamers::apply(), protocols::fldsgn::MatchResiduesMover::apply(), protocols::protein_interface_design::movers::PlaceStubMover::apply(), protocols::match::MatcherMover::apply(), protocols::abinitio::KinematicAbinitio::apply(), protocols::comparative_modeling::LoopRelaxMover::apply(), protocols::simple_moves::GenericMonteCarloMover::apply(), protocols::docking::DockingProtocol::apply(), protocols::moves::SequenceMover::apply(), protocols::abinitio::ClassicAbinitio::apply(), protocols::abinitio::JumpingFoldConstraintsWrapper::apply(), protocols::fldsgn::BluePrintBDR::apply(), protocols::forge::components::BDR::apply(), protocols::forge::remodel::RemodelMover::apply(), protocols::forge::remodel::RemodelLoopMover::apply(), protocols::forge::components::VarLengthBuild::apply(), protocols::rosetta_scripts::ParsedProtocol::apply_filter(), protocols::anchored_design::AnchoredDesignMover::filter(), protocols::rosetta_scripts::ParsedProtocol::finish_protocol(), protocols::rosetta_scripts::ParsedProtocol::get_additional_output(), and protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop().

void protocols::moves::Mover::set_native_pose ( PoseCOP  pose)
virtual

setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe

Reimplemented in protocols::moves::TrialMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, and protocols::moves::MoverContainer.

References native_pose_.

Referenced by protocols::docking::stateless::SaneDockingProtocol::apply(), protocols::enzdes::EnzdesFixBBProtocol::apply(), protocols::protein_interface_design::movers::BackrubDDMover::apply(), protocols::loophash::Mover_LoopHashRefine::apply(), protocols::enzdes::EnzdesFlexBBProtocol::apply(), protocols::protein_interface_design::movers::LoopMoverFromCommandLine::apply(), protocols::flexpep_docking::FlexPepDockingProtocol::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), protocols::loops::loop_mover::refine::LoopMover_Refine_CCD::apply(), protocols::antibody2::RefineOneCDRLoop::apply(), protocols::comparative_modeling::LoopRelaxMover::apply(), protocols::relax::FastRelax::apply(), protocols::docking::DockingProtocol::apply(), protocols::LoopRefine::apply(), protocols::dna::DesignProteinBackboneAroundDNA::ccd(), protocols::enzdes::EnzdesBaseProtocol::EnzdesBaseProtocol(), protocols::antibody2::GraftCDRLoopsProtocol::finalize_setup(), protocols::antibody2::AntibodyModelerProtocol::finalize_setup(), protocols::antibody2::GraftCDRLoopsProtocol::init_from_options(), protocols::antibody2::AntibodyModelerProtocol::init_from_options(), protocols::docking::DockingProtocol::init_from_options(), protocols::jobdist::main_plain_mover(), protocols::flexpep_docking::FlexPepDockingProtocol::parse_my_tag(), protocols::symmetric_docking::SymDockProtocol::register_options(), protocols::relax::WorkUnit_BatchRelax::run(), protocols::jd2::set_native_in_mover(), protocols::moves::MoverContainer::set_native_pose(), protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer::set_native_pose(), protocols::moves::TrialMover::set_native_pose(), protocols::abinitio::AbrelaxApplication::setup_fold(), protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler::StepWiseRNA_AnalyticalLoopCloseSampler(), protocols::swa::rna::StepWiseRNA_Minimizer::StepWiseRNA_Minimizer(), protocols::swa::rna::StepWiseRNA_ResidueSampler::StepWiseRNA_ResidueSampler(), and protocols::jobdist::universal_main().

virtual void protocols::moves::Mover::test_move ( Pose pose)
inlinevirtual

: Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying

Reimplemented in protocols::simple_moves::ShearMover, protocols::simple_moves::SmallMover, protocols::simple_moves::sidechain_moves::SidechainMover, protocols::simple_moves::ScoreMover, protocols::contact_map::ContactMap, and protocols::moves::NullMover.

References apply().

std::string const& protocols::moves::Mover::type ( ) const
inline

References type_.

Referenced by protocols::dna::DnaInterfacePacker::add_complementary_sequence(), protocols::anchored_design::AnchoredDesignMover::AnchoredDesignMover(), protocols::anchored_design::AnchoredPerturbMover::AnchoredPerturbMover(), protocols::anchored_design::AnchoredRefineMover::AnchoredRefineMover(), protocols::simple_moves::BackboneMover::angle_max(), protocols::antibody::AntibodyModeler::AntibodyModeler(), protocols::enzdes::BackboneSampler::apply(), protocols::protein_interface_design::movers::BackrubDDMover::apply(), protocols::moves::JumpOutMover::apply(), protocols::simple_moves::BackboneMover::apply(), protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover::apply(), protocols::simple_moves::sidechain_moves::SidechainMCMover::apply(), protocols::moves::SequenceMover::apply(), protocols::moves::RandomMover::apply(), protocols::simple_moves::BackboneMover::BackboneMover(), protocols::simple_moves::BBConRotMover::BBConRotMover(), protocols::simple_moves::BBG8T3AMover::BBG8T3AMover(), protocols::simple_moves::BBGaussianMover::BBGaussianMover(), protocols::surface_docking::CentroidRelaxMover::CentroidRelaxMover(), protocols::simple_moves::chiral::ChiralMover::ChiralMover(), protocols::hybridization::ChunkTrialMover::ChunkTrialMover(), protocols::abinitio::ClassicAbinitio::ClassicAbinitio(), protocols::docking::ConformerSwitchMover::ConformerSwitchMover(), protocols::abinitio::ConstraintFragmentSampler::ConstraintFragmentSampler(), protocols::protein_interface_design::movers::TaskAwareCsts::cst_type(), protocols::docking::DockingEnsemblePrepackProtocol::DockingEnsemblePrepackProtocol(), protocols::docking::DockingHighResLegacy::DockingHighResLegacy(), protocols::docking::DockingInitialPerturbation::DockingInitialPerturbation(), protocols::docking::DockingLowResEnsemble::DockingLowResEnsemble(), protocols::docking::DockingPrepackProtocol::DockingPrepackProtocol(), protocols::docking::DockingSlideIntoContact::DockingSlideIntoContact(), protocols::docking::DockMCMCycle::DockMCMCycle(), protocols::simple_moves::EnergyCutRotamerTrialsMinMover::EnergyCutRotamerTrialsMinMover(), protocols::simple_moves::EnergyCutRotamerTrialsMover::EnergyCutRotamerTrialsMover(), protocols::enzdes::EnzdesBaseProtocol::EnzdesBaseProtocol(), protocols::docking::FaDockingSlideIntoContact::FaDockingSlideIntoContact(), protocols::surface_docking::FaSlideAwayFromSurface::FaSlideAwayFromSurface(), protocols::surface_docking::FaSlideIntoSurface::FaSlideIntoSurface(), protocols::simple_moves::symmetry::FaSymDockingSlideTogether::FaSymDockingSlideTogether(), protocols::floppy_tail::FloppyTailMover::FloppyTailMover(), protocols::abinitio::FoldConstraints::FoldConstraints(), protocols::simple_moves::FragmentMover::FragmentMover(), protocols::abinitio::FragmentSampler::FragmentSampler(), protocols::surface_docking::FullatomRelaxMover::FullatomRelaxMover(), protocols::simple_moves::AddCavitiesMover::get_closest_heavy_atom(), protocols::antibody2::SnugDockProtocol::get_name(), protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer::get_name(), protocols::antibody2::SnugDock::get_name(), protocols::loops::loop_mover::refine::RepackTrial::get_name(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::get_name(), protocols::loops::loop_mover::refine::LoopRefineInnerCycle::get_name(), protocols::loops::loop_mover::refine::ShearMinCCDTrial::get_name(), protocols::simple_moves::carbohydrates::RingConformationMover::get_name(), protocols::docking::DockingLowRes::get_name(), protocols::simple_moves::hbs::HbsPatcher::HbsPatcher(), protocols::simple_moves::HelicalPeptideLengthMover::HelicalPeptideLengthMover(), protocols::loops::loop_mover::refine::LoopMover_Refine_KIC::init(), protocols::antibody2::SnugDockProtocol::init(), protocols::antibody2::SnugDock::init(), protocols::docking::DockMCMProtocol::init(), protocols::loops::loop_mover::refine::RepackTrial::init(), protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer::init(), protocols::loops::loop_mover::refine::ShearMinCCDTrial::init(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::init(), protocols::simple_moves::carbohydrates::RingConformationMover::init(), protocols::loops::loop_mover::refine::LoopRefineInnerCycle::init(), protocols::docking::DockingLowRes::init(), protocols::docking::TemperedDocking::init(), protocols::docking::DockingHighRes::init(), protocols::docking::DockingProtocol::init(), protocols::hybridization::InsertChunkMover::InsertChunkMover(), protocols::analysis::InterfaceAnalyzerMover::InterfaceAnalyzerMover(), protocols::docking::InterfaceSidechainMinMover::InterfaceSidechainMinMover(), protocols::abinitio::JumpingFoldConstraintsWrapper::JumpingFoldConstraintsWrapper(), protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover::JumpRotamerSidechainMover(), protocols::abinitio::KinematicAbinitio::KinematicAbinitio(), protocols::analysis::LoopAnalyzerMover::LoopAnalyzerMover(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::LoopMover_Perturb_CCD(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::LoopMover_Perturb_KIC(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD::LoopMover_Perturb_QuickCCD(), protocols::loops::loop_mover::refine::LoopMover_Refine_Backrub::LoopMover_Refine_Backrub(), protocols::loops::loop_mover::refine::LoopMover_Refine_CCD::LoopMover_Refine_CCD(), protocols::loop_build::LoopMover_SlidingWindow::LoopMover_SlidingWindow(), protocols::ligand_docking::HighResDocker::make_packer_task_from_vector(), protocols::moves::MCShowMover::MCShowMover(), protocols::dna::DnaInterfacePacker::measure_bp_specificities(), protocols::abinitio::MembraneAbinitio::MembraneAbinitio(), protocols::canonical_sampling::TrialCounterObserver::observe_after_metropolis(), protocols::simple_moves::oop::OopDPuckMinusMover::OopDPuckMinusMover(), protocols::simple_moves::oop::OopDPuckPlusMover::OopDPuckPlusMover(), protocols::simple_moves::oop::OopMover::OopMover(), protocols::simple_moves::oop::OopPatcher::OopPatcher(), protocols::simple_moves::oop::OopPuckMinusMover::OopPuckMinusMover(), protocols::simple_moves::oop::OopPuckPlusMover::OopPuckPlusMover(), protocols::simple_moves::oop::OopRandomPuckMover::OopRandomPuckMover(), protocols::simple_moves::oop::OopRandomSmallMover::OopRandomSmallMover(), protocols::canonical_sampling::MetricRecorder::parse_my_tag(), protocols::moves::PDBDumpMover::PDBDumpMover(), protocols::simple_moves::PeptideStapleMover::PeptideStapleMover(), protocols::simple_moves::sidechain_moves::PerturbChiSidechainMover::PerturbChiSidechainMover(), protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover::PerturbRotamerSidechainMover(), protocols::moves::ProfilerMover::ProfilerMover(), protocols::rna::RNA_FragmentMover::random_fragment_insertion(), protocols::ligand_docking::MinimizeBackbone::restrain_protein_Calphas(), protocols::simple_moves::ReturnSidechainMover::ReturnSidechainMover(), protocols::rigid::RigidBodyDeterministicSpinMover::RigidBodyDeterministicSpinMover(), protocols::rigid::RigidBodyDofPerturbMover::RigidBodyDofPerturbMover(), protocols::rigid::RigidBodyDofRandomizeMover::RigidBodyDofRandomizeMover(), protocols::rigid::RigidBodyDofRandomTransMover::RigidBodyDofRandomTransMover(), protocols::rigid::RigidBodyDofSeqPerturbMover::RigidBodyDofSeqPerturbMover(), protocols::rigid::RigidBodyDofSeqRandomizeMover::RigidBodyDofSeqRandomizeMover(), protocols::rigid::RigidBodyDofSeqTransMover::RigidBodyDofSeqTransMover(), protocols::rigid::RigidBodyDofTransMover::RigidBodyDofTransMover(), protocols::rigid::RigidBodyPerturbNoCenterMover::RigidBodyPerturbNoCenterMover(), protocols::rigid::RigidBodyRandomizeMover::RigidBodyRandomizeMover(), protocols::rigid::RigidBodySpinMover::RigidBodySpinMover(), protocols::rigid::RigidBodyTransMover::RigidBodyTransMover(), protocols::rigid::RollMover::RollMover(), protocols::simple_moves::RotamerTrialsMinMover::RotamerTrialsMinMover(), protocols::simple_moves::RotamerTrialsMover::RotamerTrialsMover(), protocols::rigid::RotateJumpAxisMover::RotateJumpAxisMover(), protocols::simple_moves::GenericMonteCarloMover::set_sampletype(), protocols::simple_moves::ShearMover::ShearMover(), protocols::docking::SidechainMinMover::SidechainMinMover(), protocols::surface_docking::SlideIntoSurface::SlideIntoSurface(), protocols::simple_moves::SmallMover::SmallMover(), protocols::surface_docking::SurfaceDockingProtocol::SurfaceDockingProtocol(), protocols::surface_docking::SurfaceOrientMover::SurfaceOrientMover(), protocols::symmetric_docking::SymDockingHiRes::SymDockingHiRes(), protocols::simple_moves::symmetry::SymDockingInitialPerturbation::SymDockingInitialPerturbation(), protocols::symmetric_docking::SymDockingLowRes::SymDockingLowRes(), protocols::simple_moves::symmetry::SymDockingSlideIntoContact::SymDockingSlideIntoContact(), protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover::SymEnergyCutRotamerTrialsMover(), protocols::simple_moves::symmetry::SymRotamerTrialsMover::SymRotamerTrialsMover(), protocols::simple_moves::TaskAwareMinMover::TaskAwareMinMover(), protocols::simple_moves::TorsionDOFMover::TorsionDOFMover(), protocols::rigid::UniformSphereTransMover::UniformSphereTransMover(), protocols::simple_moves::sidechain_moves::SidechainMover::update_type(), protocols::hybridization::WeightedFragmentSmoothTrialMover::WeightedFragmentSmoothTrialMover(), and protocols::hybridization::WeightedFragmentTrialMover::WeightedFragmentTrialMover().

void protocols::moves::Mover::type ( const std::string &  type_in)
inline

References type_.

Member Data Documentation

jobdist::BasicJobCOP protocols::moves::Mover::current_job_
private

this field can be NULL or it refers to the current JOB this mover is working on.

Referenced by get_current_job(), operator=(), and set_current_job().

std::string protocols::moves::Mover::current_tag_
private
Strings protocols::moves::Mover::info_
private

miscellaneous info: optional notes about mover results. Fed to Job by JobDistributor (jd2), allowing JobOutputters to optionally report this information in some way.

Referenced by clear_info(), and info().

PoseCOP protocols::moves::Mover::input_pose_
private
MoverStatus protocols::moves::Mover::last_status_
private

used to track if movers fail their filters - jobdist::BasicJob Distributor queries for this value

Referenced by get_last_move_status(), operator=(), reset_status(), and set_last_move_status().

PoseCOP protocols::moves::Mover::native_pose_
private
std::string protocols::moves::Mover::type_
private

Referenced by get_type(), operator=(), and type().


The documentation for this class was generated from the following files: