| cache_ | protocols::frag_picker::scores::ProfileScoreL1 | protected |
| cached_score(FragmentCandidateOP, FragmentScoreMapOP) | protocols::frag_picker::scores::ProfileScoreL1 | virtual |
| cached_scores_id_ | protocols::frag_picker::scores::ProfileScoreL1 | private |
| CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::CachingScoringMethod | inline |
| clean_up() | protocols::frag_picker::scores::ProfileScoreL1 | inlinevirtual |
| clear() | protocols::frag_picker::scores::ProfileScoreL1 | private |
| do_caching(VallChunkOP) | protocols::frag_picker::scores::ProfileScoreL1 | virtual |
| do_caching_simple(VallChunkOP) | protocols::frag_picker::scores::ProfileScoreL1 | |
| FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_id() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_min_allowed_score() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_priority() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_score_name() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_use_lowest() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| id_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| lowest_acceptable_value_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| name_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| priority_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| ProfileScoreL1(Size, Real, bool, sequence::SequenceProfileOP, utility::vector1< Size > &, Size) | protocols::frag_picker::scores::ProfileScoreL1 | |
| query_profile_ | protocols::frag_picker::scores::ProfileScoreL1 | private |
| score(FragmentCandidateOP, FragmentScoreMapOP) | protocols::frag_picker::scores::ProfileScoreL1 | virtual |
| scores_ | protocols::frag_picker::scores::ProfileScoreL1 | protected |
| set_id(Size id) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| set_min_allowed_score(Real lowest_acceptable_value) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| use_lowest_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| ~ProfileScoreL1() | protocols::frag_picker::scores::ProfileScoreL1 | |
1.8.4