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ScoringSchemeFactory.cc File Reference

Factory for creating various types of ScoringSchemes for use in sequence alignment. More...

#include <core/sequence/ScoringScheme.hh>
#include <core/sequence/ScoringSchemeFactory.hh>
#include <core/sequence/SimpleScoringScheme.hh>
#include <core/sequence/MatrixScoringScheme.hh>
#include <core/sequence/DPScoringScheme.hh>
#include <core/sequence/L1ScoringScheme.hh>
#include <core/sequence/ProfSimScoringScheme.hh>
#include <core/sequence/CompassScoringScheme.hh>
#include <core/sequence/CompositeScoringScheme.hh>
#include <core/sequence/ChemicalShiftScoringScheme.hh>
#include <utility/exit.hh>

Namespaces

 core
 A class for defining atom parameters, known as atom_types.
 
 core::sequence
 

Constant Groups

 core
 A class for defining atom parameters, known as atom_types.
 
 core::sequence
 

Detailed Description

Factory for creating various types of ScoringSchemes for use in sequence alignment.

Author
James Thompson