#include <LoopsDatabaseDefiner.hh>

Inheritance diagram for protocols::loops::loops_definers::LoopsDatabaseDefiner:

Collaboration diagram for protocols::loops::loops_definers::LoopsDatabaseDefiner:

Public Member Functions
	LoopsDatabaseDefiner ()

virtual	~LoopsDatabaseDefiner ()

	LoopsDatabaseDefiner (LoopsDatabaseDefiner const &src)

virtual LoopsDefinerOP	clone () const
	Create another loops definer of the type matching the most-derived version of the class. More...

virtual void	parse_my_tag (utility::tag::TagPtr const tag, moves::DataMap const &data, core::pose::Pose const &)
	Used to parse an xml-like tag to load parameters and properties. More...

virtual SerializedLoopList	apply (core::pose::Pose const &)

Public Member Functions inherited from protocols::loops::loops_definers::LoopsDefiner
virtual	~LoopsDefiner ()

Private Attributes
utility::sql_database::sessionOP	db_session_

std::string	database_table_

Detailed Description

@ details given a database table with the following schema, defining a single loop per row

CREATE TABLE loops ( tag TEXT, start INTEGER, stop INTEGER, cut INTEGER, skip_rate REAL, extended BOOLEAN);

return all loops associated with the job distributor input tag Note: you can specify a different table using the 'database_table' field

Note: if you would like to query the database for loops differently, you can either pre-query the table and store it, or extend, subclass, or create a different LoopsDefiner class.

Constructor & Destructor Documentation

protocols::loops::loops_definers::LoopsDatabaseDefiner::LoopsDatabaseDefiner ( )

Referenced by clone().

protocols::loops::loops_definers::LoopsDatabaseDefiner::~LoopsDatabaseDefiner ( )

virtual

protocols::loops::loops_definers::LoopsDatabaseDefiner::LoopsDatabaseDefiner ( LoopsDatabaseDefiner const & src)

Member Function Documentation

SerializedLoopList protocols::loops::loops_definers::LoopsDatabaseDefiner::apply ( core::pose::Pose const & )

virtual

Implements protocols::loops::loops_definers::LoopsDefiner.

References protocols::nonlocal::current_job(), protocols::loops::SerializedLoop::cut, database_table_, protocols::pack_daemon::error_message, protocols::loops::SerializedLoop::extended, protocols::loops::SerializedLoop::skip_rate, protocols::loops::SerializedLoop::start, and protocols::loops::SerializedLoop::stop.

LoopsDefinerOP protocols::loops::loops_definers::LoopsDatabaseDefiner::clone ( ) const

virtual

Create another loops definer of the type matching the most-derived version of the class.

Implements protocols::loops::loops_definers::LoopsDefiner.

References LoopsDatabaseDefiner().

void protocols::loops::loops_definers::LoopsDatabaseDefiner::parse_my_tag	(	utility::tag::TagPtr const	tag,
		moves::DataMap const &	data,
		core::pose::Pose const &
	)