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protocols::evaluation::AlignEvaluator Class Referenceabstract

#include <AlignEvaluator.hh>

Inheritance diagram for protocols::evaluation::AlignEvaluator:
Inheritance graph
Collaboration diagram for protocols::evaluation::AlignEvaluator:
Collaboration graph

Public Member Functions

 AlignEvaluator (core::pose::PoseCOP native_pose, std::string tag="", bool report_aln_components=true, core::sequence::SequenceAlignmentOP aln=0)
 ~AlignEvaluator ()
virtual void apply (core::pose::Pose &pose, std::string tag, core::io::silent::SilentStruct &ss) const =0
 evaluate pose and store values in Silent_Struct why is this specific to a specific type of SilentStruct? that seems needlessly pointless and overly constraining. More...
virtual core::Real apply (core::pose::Pose &) const
 outdated method - don't use! More...
core::sequence::SequenceAlignmentOP get_alignment (core::pose::Pose const &pose) const
void report_aln_components (bool const setting)
bool report_aln_components () const
std::string tag () const
core::pose::PoseCOP native_pose () const
- Public Member Functions inherited from protocols::evaluation::SingleValuePoseEvaluator< core::Real >
 SingleValuePoseEvaluator (std::string name)
virtual bool applicable (core::pose::Pose const &) const
virtual core::Size size () const
virtual std::string name (core::Size) const
- Public Member Functions inherited from protocols::evaluation::PoseEvaluator
 PoseEvaluator ()
virtual ~PoseEvaluator ()
virtual void apply (core::io::silent::SilentStruct &pss) const
 direct application to SilentStruct... default implementation makes pose and calls "apply", you can overload if you don't need the pose-step More...

Private Attributes

core::pose::PoseCOP native_pose_
std::string tag_
bool report_aln_components_
core::sequence::SequenceAlignmentOP aln_

Constructor & Destructor Documentation

protocols::evaluation::AlignEvaluator::AlignEvaluator ( core::pose::PoseCOP  native_pose,
std::string  tag = "",
bool  report_aln_components = true,
core::sequence::SequenceAlignmentOP  aln = 0 
protocols::evaluation::AlignEvaluator::~AlignEvaluator ( )

Member Function Documentation

virtual void protocols::evaluation::AlignEvaluator::apply ( core::pose::Pose ,
std::string  tag,
core::io::silent::SilentStruct pss 
) const
pure virtual

evaluate pose and store values in Silent_Struct why is this specific to a specific type of SilentStruct? that seems needlessly pointless and overly constraining.

Reimplemented from protocols::evaluation::SingleValuePoseEvaluator< core::Real >.

Implemented in protocols::comparative_modeling::Align_RmsdEvaluator, and protocols::comparative_modeling::Align_RotamerEvaluator.

virtual core::Real protocols::evaluation::AlignEvaluator::apply ( core::pose::Pose ) const
core::sequence::SequenceAlignmentOP protocols::evaluation::AlignEvaluator::get_alignment ( core::pose::Pose const &  pose) const
core::pose::PoseCOP protocols::evaluation::AlignEvaluator::native_pose ( ) const
void protocols::evaluation::AlignEvaluator::report_aln_components ( bool const  setting)
bool protocols::evaluation::AlignEvaluator::report_aln_components ( ) const
std::string protocols::evaluation::AlignEvaluator::tag ( ) const

Member Data Documentation

core::sequence::SequenceAlignmentOP protocols::evaluation::AlignEvaluator::aln_

Referenced by get_alignment().

core::pose::PoseCOP protocols::evaluation::AlignEvaluator::native_pose_

Referenced by get_alignment(), and native_pose().

bool protocols::evaluation::AlignEvaluator::report_aln_components_

Referenced by report_aln_components().

std::string protocols::evaluation::AlignEvaluator::tag_

Referenced by tag().

The documentation for this class was generated from the following files: