| add_constraints_to_pose(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx, bool accept_blocks_missing_header) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| add_constraints_to_pose_for_block_without_clearing_and_header_processing(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx, core::Size cst_block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| add_pregenerated_constraints_to_pose(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| allowed_res_name3_at_position(core::pose::Pose const &pose, core::Size const seqpos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| clear_active_pose_constraints_for_block(core::pose::Pose &pose, core::Size cst_block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| contains_position(core::pose::Pose const &pose, core::Size const seqpos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| cst_pairs_ | protocols::toolbox::match_enzdes_util::EnzConstraintIO | protected |
| determine_target_downstream_res() | protocols::toolbox::match_enzdes_util::EnzConstraintIO | private |
| enz_cst_params(core::Size block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| enz_cst_params_missing_in_pose(core::pose::Pose const &pose) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| enz_cst_params_size() | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
| EnzConstraintIO(core::chemical::ResidueTypeSetCAP src_restype_set) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| generate_pose_specific_data(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | private |
| generate_pose_specific_data_for_block(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scofx, core::Size cst_block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | private |
| generic_instance_ | protocols::toolbox::match_enzdes_util::EnzConstraintIO | privatestatic |
| get_instance() | protocols::toolbox::match_enzdes_util::EnzConstraintIO | static |
| is_backbone_only_cst(core::pose::Pose const &pose, core::Size const seqpos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| mcfi_list(core::Size block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| mcfi_lists_ | protocols::toolbox::match_enzdes_util::EnzConstraintIO | private |
| mcfi_lists_size() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| num_mcfi_lists() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
| ordered_constrained_positions(core::pose::Pose const &pose) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| process_pdb_header(core::pose::Pose &pose, bool accept_missing_blocks) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| read_enzyme_cstfile(std::string fname) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| remap_resid(core::id::SequenceMapping const &smap) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| remove_constraints_from_pose(core::pose::Pose &pose, bool const keep_covalent, bool const fail_on_constraints_missing) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| remove_constraints_from_pose_for_block(core::pose::Pose &pose, core::Size cst_block, bool const fail_on_constraints_missing) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| remove_position_from_template_res(core::pose::Pose &pose, core::Size pos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| remove_position_from_template_res_for_block(core::pose::Pose &pose, core::Size pos, core::Size cst_block) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| restype_set_ | protocols::toolbox::match_enzdes_util::EnzConstraintIO | private |
| set_external_position_for_resA_in_parameter_block(core::Size cst_block, core::Size respos) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| set_external_position_for_resB_in_parameter_block(core::Size cst_block, core::Size respos) | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| set_position_for_missing_res_in_parameter_block(core::pose::Pose &pose, core::Size cst_block, core::Size respos) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| show_cst_definitions() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| target_downstream_res() const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | inline |
| target_downstream_res_ | protocols::toolbox::match_enzdes_util::EnzConstraintIO | private |
| update_pdb_remarks_for_backbone_params(core::pose::Pose &pose) const | protocols::toolbox::match_enzdes_util::EnzConstraintIO | |
| ~EnzConstraintIO() | protocols::toolbox::match_enzdes_util::EnzConstraintIO | virtual |
1.8.4