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protocols::fldsgn::filters::HelixPairingFilter Class Reference

#include <HelixPairingFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::HelixPairingFilter:
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Collaboration diagram for protocols::fldsgn::filters::HelixPairingFilter:
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Public Types

typedef protocols::filters::Filter Super
 
typedef protocols::filters::Filter Filter
 
typedef std::string String
 
typedef core::Real Real
 
typedef core::Size Size
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::pose::Pose Pose
 
typedef
protocols::fldsgn::topology::HelixPairing 
HelixPairing
 
typedef
protocols::fldsgn::topology::HelixPairings 
HelixPairings
 
typedef
protocols::fldsgn::topology::HelixPairingSet 
HelixPairingSet
 
typedef
protocols::fldsgn::topology::HelixPairingSetOP 
HelixPairingSetOP
 
typedef utility::tag::TagPtr TagPtr
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef protocols::moves::DataMap DataMap
 
typedef
protocols::moves::Movers_map 
Movers_map
 

Public Member Functions

 HelixPairingFilter ()
 
 HelixPairingFilter (String const &hf)
 
 HelixPairingFilter (HelixPairings const &hpairs)
 
 HelixPairingFilter (HelixPairingFilter const &rval)
 
virtual ~HelixPairingFilter ()
 
virtual FilterOP clone () const
 
virtual FilterOP fresh_instance () const
 
void helix_pairings (String const &hpairs)
 
void helix_pairings (HelixPairings const &hpairs)
 
void secstruct (String const &ss)
 
virtual std::string name () const
 
virtual void parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &)
 parse xml More...
 
Real report_sm (Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
Real compute (Pose const &pose) const
 
virtual bool apply (Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual void report (std::ostream &, core::pose::Pose const &) const
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 

Private Attributes

String secstruct_
 if value is empty, dssp will run for ss definition ( default is emptry ) More...
 
Real dist_cutoff_
 
Real bend_angle_
 
Real cross_angle_
 
Real align_angle_
 
HelixPairingSetOP hpairset_
 helix pairings More...
 
Size output_id_
 HelixPairing id for output. More...
 
String output_type_
 output type, dist or angle More...
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::fldsgn::filters::HelixPairingFilter::HelixPairingFilter ( )

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::HelixPairingFilter::HelixPairingFilter ( String const &  hf)

References hpairset_.

protocols::fldsgn::filters::HelixPairingFilter::HelixPairingFilter ( HelixPairings const &  hpairs)
protocols::fldsgn::filters::HelixPairingFilter::HelixPairingFilter ( HelixPairingFilter const &  rval)
virtual protocols::fldsgn::filters::HelixPairingFilter::~HelixPairingFilter ( )
inlinevirtual

Member Function Documentation

bool protocols::fldsgn::filters::HelixPairingFilter::apply ( Pose const &  pose) const
virtual
virtual FilterOP protocols::fldsgn::filters::HelixPairingFilter::clone ( ) const
inlinevirtual
HelixPairingFilter::Real protocols::fldsgn::filters::HelixPairingFilter::compute ( Pose const &  pose) const
virtual FilterOP protocols::fldsgn::filters::HelixPairingFilter::fresh_instance ( ) const
inlinevirtual
void protocols::fldsgn::filters::HelixPairingFilter::helix_pairings ( String const &  hpairs)

References hpairset_.

Referenced by apply(), compute(), and parse_my_tag().

void protocols::fldsgn::filters::HelixPairingFilter::helix_pairings ( HelixPairings const &  hpairs)

References hpairset_.

virtual std::string protocols::fldsgn::filters::HelixPairingFilter::name ( ) const
inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::fldsgn::filters::HelixPairingFilter::parse_my_tag ( TagPtr const  tag,
DataMap ,
Filters_map const &  ,
Movers_map const &  ,
Pose const &   
)
virtual
HelixPairingFilter::Real protocols::fldsgn::filters::HelixPairingFilter::report_sm ( Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::fldsgn::filters::HelixPairingFilter::secstruct ( String const &  ss)

References secstruct_.

Member Data Documentation

Real protocols::fldsgn::filters::HelixPairingFilter::align_angle_
private

Referenced by apply(), and parse_my_tag().

Real protocols::fldsgn::filters::HelixPairingFilter::bend_angle_
private

Referenced by apply(), and parse_my_tag().

Real protocols::fldsgn::filters::HelixPairingFilter::cross_angle_
private

Referenced by apply(), and parse_my_tag().

Real protocols::fldsgn::filters::HelixPairingFilter::dist_cutoff_
private

Referenced by apply(), and parse_my_tag().

HelixPairingSetOP protocols::fldsgn::filters::HelixPairingFilter::hpairset_
private

helix pairings

Referenced by apply(), compute(), helix_pairings(), HelixPairingFilter(), and parse_my_tag().

Size protocols::fldsgn::filters::HelixPairingFilter::output_id_
private

HelixPairing id for output.

Referenced by compute(), and parse_my_tag().

String protocols::fldsgn::filters::HelixPairingFilter::output_type_
private

output type, dist or angle

Referenced by compute(), and parse_my_tag().

String protocols::fldsgn::filters::HelixPairingFilter::secstruct_
mutableprivate

if value is empty, dssp will run for ss definition ( default is emptry )

Referenced by apply(), compute(), parse_my_tag(), and secstruct().


The documentation for this class was generated from the following files: