Rosetta 3.5
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Public Types | Public Member Functions | Private Attributes | List of all members
protocols::toolbox::task_operations::DesignAroundOperation Class Reference

#include <DesignAroundOperation.hh>

Inheritance diagram for protocols::toolbox::task_operations::DesignAroundOperation:
Inheritance graph
[legend]
Collaboration diagram for protocols::toolbox::task_operations::DesignAroundOperation:
Collaboration graph
[legend]

Public Types

typedef RestrictOperationsBase parent
 
- Public Types inherited from protocols::toolbox::task_operations::RestrictOperationsBase
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr TagPtr
 
typedef pose::Pose Pose
 

Public Member Functions

 DesignAroundOperation ()
 
void design_shell (core::Real const radius)
 
core::Real design_shell () const
 
void include_residue (core::Size const resid)
 
virtual ~DesignAroundOperation ()
 
virtual TaskOperationOP clone () const
 Create another task operation of the type matching the most-derived version of the class. More...
 
virtual void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const
 restricts to repacking all residues outside of design_shell_ around each residue More...
 
virtual void parse_tag (TagPtr)
 Used to parse an xml-like tag to load parameters and properties. More...
 
virtual void parse_def (utility::lua::LuaObject const &def)
 
void repack_shell (core::Real const repack_shell)
 
core::Real repack_shell () const
 
void allow_design (bool const a)
 
bool allow_design () const
 
- Public Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 
virtual ~RestrictOperationsBase ()
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual ~TaskOperation ()
 

Private Attributes

core::Real design_shell_
 
core::Real repack_shell_
 
bool allow_design_
 
std::set< core::Sizeresid_
 
std::string string_resnums_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...
 

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::toolbox::task_operations::DesignAroundOperation::DesignAroundOperation ( )

References resid_.

Referenced by clone().

protocols::toolbox::task_operations::DesignAroundOperation::~DesignAroundOperation ( )
virtual

Member Function Documentation

void protocols::toolbox::task_operations::DesignAroundOperation::allow_design ( bool const  a)
inline

References allow_design_.

bool protocols::toolbox::task_operations::DesignAroundOperation::allow_design ( ) const
inline

References allow_design_.

Referenced by apply(), parse_def(), and parse_tag().

void protocols::toolbox::task_operations::DesignAroundOperation::apply ( core::pose::Pose const &  pose,
core::pack::task::PackerTask task 
) const
virtual
core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::DesignAroundOperation::clone ( ) const
virtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

References DesignAroundOperation().

void protocols::toolbox::task_operations::DesignAroundOperation::design_shell ( core::Real const  radius)
core::Real protocols::toolbox::task_operations::DesignAroundOperation::design_shell ( ) const
inline

References design_shell_.

Referenced by apply(), parse_def(), parse_tag(), and repack_shell().

void protocols::toolbox::task_operations::DesignAroundOperation::include_residue ( core::Size const  resid)
void protocols::toolbox::task_operations::DesignAroundOperation::parse_def ( utility::lua::LuaObject const &  def)
virtual
void protocols::toolbox::task_operations::DesignAroundOperation::parse_tag ( TagPtr  tag)
virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References allow_design(), design_shell(), repack_shell(), string_resnums_, and protocols::TR().

void protocols::toolbox::task_operations::DesignAroundOperation::repack_shell ( core::Real const  repack_shell)
inline
core::Real protocols::toolbox::task_operations::DesignAroundOperation::repack_shell ( ) const
inline

Member Data Documentation

bool protocols::toolbox::task_operations::DesignAroundOperation::allow_design_
private

Referenced by allow_design().

core::Real protocols::toolbox::task_operations::DesignAroundOperation::design_shell_
private

Referenced by design_shell(), and repack_shell().

core::Real protocols::toolbox::task_operations::DesignAroundOperation::repack_shell_
private

Referenced by design_shell(), and repack_shell().

std::set< core::Size > protocols::toolbox::task_operations::DesignAroundOperation::resid_
private
std::string protocols::toolbox::task_operations::DesignAroundOperation::string_resnums_
private

Referenced by apply(), parse_def(), and parse_tag().


The documentation for this class was generated from the following files: