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RNA_DeNovoProtocol.cc File Reference
#include <protocols/rna/RNA_DeNovoProtocol.hh>
#include <protocols/toolbox/AllowInsert.hh>
#include <protocols/rna/RNA_BasePairClassifier.hh>
#include <protocols/rna/RNA_DataReader.hh>
#include <protocols/rna/RNA_DataReader.fwd.hh>
#include <protocols/rna/FullAtomRNA_Fragments.hh>
#include <protocols/rna/RNA_LoopCloser.hh>
#include <protocols/rna/RNA_LoopCloser.fwd.hh>
#include <protocols/rna/RNA_Minimizer.fwd.hh>
#include <protocols/rna/RNA_Minimizer.hh>
#include <protocols/rna/RNA_Relaxer.fwd.hh>
#include <protocols/rna/RNA_Relaxer.hh>
#include <protocols/rna/RNA_StructureParameters.hh>
#include <protocols/rna/RNA_ChunkLibrary.hh>
#include <protocols/rna/RNA_ChunkLibrary.fwd.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/swa/StepWiseUtil.hh>
#include <protocols/swa/rna/StepWiseRNA_Util.hh>
#include <protocols/rna/RNA_ProtocolUtil.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MonteCarlo.fwd.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rna/RNA_LowResolutionPotential.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/rna/RNA_Util.hh>
#include <core/scoring/rna/chemical_shift/RNA_ChemicalShiftPotential.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID.hh>
#include <core/id/DOF_ID.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.hh>
#include <basic/database/open.hh>
#include <core/io/silent/RNA_SilentStruct.hh>
#include <core/io/silent/BinaryRNASilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/kinematics/ShortestPathInFoldTree.hh>
#include <core/scoring/rna/RNA_BaseDoubletClasses.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyMap.hh>
#include <utility/file/file_sys_util.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <numeric/random/random.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <vector>
#include <list>
#include <string>
#include <sstream>
#include <fstream>
#include <protocols/viewer/GraphicsState.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>

Namespaces

 ObjexxFCL
 C++ headers.
 
 ObjexxFCL::fmt
 
 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::rna
 

Constant Groups

 ObjexxFCL
 C++ headers.
 
 ObjexxFCL::fmt
 
 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::rna
 

Functions

static
numeric::random::RandomGenerator 
protocols::rna::RG (12320)
 
static basic::Tracer protocols::rna::TR ("protocols.rna.rna_denovo_protocol")
 
bool protocols::rna::check_in_base_pair_list (scoring::rna::Base_pair const &base_pair, utility::vector1< core::scoring::rna::Base_pair > const &base_pair_list)