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Aligner.cc File Reference

class definition for a class that aligns two Sequence objects using dynamic programming algorithms. More...

#include <core/types.hh>
#include <core/sequence/Aligner.hh>
#include <core/sequence/DP_Matrix.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <string>
#include <utility/exit.hh>
#include <utility/vector1.hh>
#include <core/sequence/ScoringScheme.fwd.hh>

Namespaces

 core
 A class for defining atom parameters, known as atom_types.
 
 core::sequence
 

Constant Groups

 core
 A class for defining atom parameters, known as atom_types.
 
 core::sequence
 

Detailed Description

class definition for a class that aligns two Sequence objects using dynamic programming algorithms.

Author
James Thompson